[ Filter database | Import gene set | Download data | View database | Links ]
[ Documentation | Submit study | Contact ]

?
Probeset ID AJ130951.1_RC_s_at
Current gene ID AGAP006507 (AGAP006507 is also associated with: Ag.2L.48.0_CDS_s_at - Y17690.1_s_at)
Affymetrix transcript data AJ130951.1 /DEF=Anopheles gambiae mRNA for SG3 protein. /GEN=SG3 /PROD=SG3 protein /DB_XREF=gi:4210618


STAGE SIGNAL MEAN STD DEV
L 239.13 23.53
M 367 55.77
NBF 245.23 7.88
BF3h 193.37 19.51
BF24h 144.57 13.17
BF48h 190.8 10.76
BF72h 160.57 52.86
BF96h 196.47 22.09
BF15d 152.8 27.47
TISSUE SIGNAL MEAN STD DEV
Fat bodies 307.57 77.9
Midgut 307.63 74.82
Ovaries 115.87 45.37


ENSEMBL ANNOTATION
VECTORBASE ANNOTATION
USER-CONTRIBUTED NOTES (0)

AFFYMETRIX ANNOTATION
Probeset ID AJ130951.1_RC_s_at
Annotation Date 3/8/2007
UniGene ID Aga.30234
Genome Version February 2003 (IAGP v.MOZ2)
Alignments chr2L:32603435-32604162 (-) // 94.04 //
Gene Title GSG3 protein, partial
SwissProt O97409 /// Q7JMV4
Trans Membrane SNAP_ANOPHELES00000024565 // span:15-37 // numtm:1
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a UniGene identifier using 1 transcripts. // false // Matching Probes // A
Annotation Transcript Cluster BX060091(10)
Transcript Assignments BX060091 // Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC40BC11 of strain 6-9 of Anopheles gambiae (African malaria mosquito). // gb // 10 // --- /// SNAP_ANOPHELES00
Annotation Notes BX057900 // gb // 1 // Cross Hyb Matching Probes /// BX005640 // gb // 11 // Negative Strand Matching Probes /// BX045892 // gb // 11 // Negative Strand Matching Probes /// BX057899 // gb // 11 // Negative Strand Matching Probes /// BX060466 // gb // 11 /

ANOXCEL ANNOTATION
Seq name AGAP006507-PA
First residue M
Description pep:known chromosome:AgamP3:2L:33172675:33173402:1 gene:AGAP006507 transcript:AGAP006507-RA
CDS name and link to nucleotide data AGAP006507-RA
Description cdna:known chromosome:AgamP3:2L:33172675:33173402:1 gene:AGAP006507
Best match to AG-CDS AGAP006507-RA
E value 1e-109
Score 388
Extent of match 189
Length of best match 728
% identity 100
% Match length 26
First residue of match - UTR overhang 55
First residue of sequence 1
Link to whole gene + 2000nt 5' + 200nt 3' AGAP006507-PA
Link to 5' 2,000 nt AGAP006507-PA
Link to 3' 200 nt AGAP006507-PA
Gene name and view at Ensembl AGAP006507
Protein view at Ensembl AGAP006507-PA
Chromosome 2L
For or Rev F
Location 33172729..33173298
Exon locations 33172729-33173298
Number of introns and link to fasta file 0
intron lengths 0
Start 33172729
End 33173298
Gene length 569
Protein size 189
Complexity index 0.61
Increased AA (fold over average usage) T(3.12)
Cys number 1
SigP Result SIG
Cleavage Position 18-19
MW 20.023
pI 4.66
Mature MW 18.244
pI 4.58
TMHMM result ExpAA=20.81 First60=20.81 PredHel=1 Topology=i3-25o
Predicted helices 1
% membrane 11.6
% outside 86.8
% inside 1.6
Best match to NR protein database SG3 protein
E value 1E-104
Match gi|4210619
Score 381
Extent of match 189
Length of best match 189
% identity 97
% Match length 100
First residue of match 1
First residue of sequence 1
Number of segments 1
Species Anopheles gambiae
Key words ANOPHELES GAMBIAE FUNESTUS SALIVARY SG3 STEPHENSI SECRETED ANTIGEN SAGBB ENTEROCOCCUS HIRAE COLLAGEN-BINDING ADHESIN STREPTOCOCCUS MUTANS COLLAGEN BINDING HYPOTHETICAL LODDEROMYCES ELONGISPORUS NRRL GIBBERELLA ZEAE PH-1 PH 1 DROSOPHILA MELANOGASTER >GI DUMPY SHORTER THAN WILD-TYPE FAMILY MEMBER DPY-6 CAENORHABDITIS ELEGANS SIMILAR TO EGF-LIKE-DOMAIN MULTIPLE 6 STRONGYLOCENTROTUS PURPURATUS LIKE-DOMAIN LIKE DOMAIN INSECT INTESTINAL MUCIN IIM14 TRICHOPLUSIA NI IIM22 ISOFORM A LOCATION VULVA DEFECTIVE LOV-1 APIS MELLIFERA LOV 17 MUS MUSCULUS ERISTALIS TENAX BRIGGSAE
Best match to SWISSP database Integumentary mucin C.1 (FIM-C.1) (Fragment) - Xenopus laevis (African clawed
E value 2E-011
Match Q05049|MUC1_XENLA
Score 67.8
Extent of match 73
Length of best match 662
% identity 50
% Match length 11
First residue of match 0
First residue of sequence 0
Number of segments 34
PROSITE motifs CK2_PHOSPHO_SITE |MYRISTYL |PRENYLATION |
Best match to GO database BAG1, HAP: BAG family molecular chaperone regulator 1 - Homo sapiens - receptor signaling protein activity - protein binding - anti-apoptosis - cell surface receptor linked signal transduction - cytoplasm
E value .0000000
Function descriptors receptor signaling protein activity||signal transducer activity
Function parent signal transducer activity
Function second parent receptor signaling protein activity
GO # GO:0005057
E value of functional GO 1e-08
Component descriptors cytoplasm||prospore||immature spore
Component parent immature spore
Component second parent prospore
GO # GO:0005737
E value of component GO 1e-08
Process descriptors anti-apoptosis||negative regulation of apoptosis||negative regulation of programmed cell death||negative regulation of cellular physiological process||negative regulation of physiological process||negative regulation of biological process||regulation of biological process
Process parent signal transducer activity
Process second parent receptor signaling protein activity
GO # GO:0006916
E value of process GO 1e-08
Best match to KOG database Chitinase
E value 0.019
General class Cell wall/membrane/envelope biogenesis
Best match to PFAM database SSP160
E value 0.010
Best match to AEGY-PEP database conserved hypothetical protein
E value 3e-11
Match AAEL010707-RA
Score 64.3
Extent of match 54
Length of best match 355
% identity 61
% Match length 15
First residue of match 190
First residue of sequence 111
Number of segments 4
Best match to DMPROT database CG32644-PB
E value 9E-016
Match CG32644-PB
Score 79.7
Extent of match 75
Length of best match 582
% identity 60
% Match length 13
First residue of match 0
First residue of sequence 0
Number of segments 28
Best match to CELEG database dpy-6 status:Partially_confirmed TR:Q94185 protein_id:AAB07691.2 Length = 1254
E value 5E-015
Match F16F9.2
Score 77
Extent of match 84
Length of best match 1254
% identity 48
% Match length 7
First residue of match 0
First residue of sequence 0
Number of segments 45
Best match to ARAB database similar to proline-rich family protein [Arabidopsis thaliana]
E value 4E-005
Match AT5G14920.2
Score 44.3
Extent of match 123
Length of best match 223
% identity 28
% Match length 55
First residue of match 42
First residue of sequence 67
Number of segments 2
Best match to YEAST database gi|28828802|gb|AAO51397.1 (AC116984) similar to Delayed Anaerobic Gene; Dan4p
E value 5E-011
Match NR_SC:GP-AAO51397_1
Score 62.8
Extent of match 75
Length of best match 457
% identity 37
% Match length 16
First residue of match 279
First residue of sequence 112
Number of segments 17
Best match to clusterized An. gambiae ESTs from different libraries all-ests-contig_596
E value 1e-104
Score 373
Extent of match 182
Length of best match 767
% identity 99
% Match length 24
First residue of match 75
First residue of sequence 1
Number of segments 1
Orientation of output FOR
Satisfied 95% id on length 100 Y
Number of sequences on assembled contig 89
ESTs coming from from all-instars library 0
Blood-abdomen library 0
Sugar-abd library 0
Infected blood-abd library 0
Big blood fed library 0
Big non blood fed library 1
Head library 0
Immune cells 0
normalized-fatbody 0
Female salivary glands (Ribeiro and Pasteur) 51
Male salivary glands 37
Best match to Affymetrix chip AJ130951.1_RC_at
E value 1E-106
Extent of match 189
% identity 97
Clustered at 35%-Sim- on 60% of length - - Cluster# 4236
# seqs 1
Clustered at 45%-Sim- on 60% of length - - Cluster# 4778
# seqs 1
Clustered at 55%-Sim- on 60% of length - - Cluster# 5107
# seqs 1
Clustered at 65%-Sim- on 60% of length - - Cluster# 5355
# seqs 1
Clustered at 75%-Sim- on 6% of length - - Cluster# 5476
# seqs 1
Clustered at 85%-Sim- on 60% of length - - Cluster# 5549
# seqs 1
Clustered at 95%-Sim- on 60% of length - - Cluster# 5588
# seqs 1



User Contributed Notes
(Disclaimer: The following notes have not been reviewed or verified by this site's authors and thus the validity of their contents are left for the site's users to decide.)

AJ130951.1_RC_s_at


add a note
e-mail: