anopheles gambiae gene expression profile @uci

Probeset ID	AJ302661.1_s_at
Current gene ID	AGAP010647
Affymetrix transcript data	AJ302661.1 /DEF=Anopheles gambiae partial mRNA for gSG8 protein. /DB_XREF=gi:13537673

STAGE	SIGNAL MEAN	STD DEV
L	147.97	113.7
M	110	36.17
NBF	368.1	70.42
BF3h	115.93	14.9
BF24h	51.87	31.7
BF48h	87.33	82.68
BF72h	44.2	4.76
BF96h	65.67	13.05
BF15d	86.07	57.04

TISSUE	SIGNAL MEAN	STD DEV
Fat bodies	211.7	142.01
Midgut	181.63	71.29
Ovaries	66.33	45.5

ENSEMBL ANNOTATION
VECTORBASE ANNOTATION
USER-CONTRIBUTED NOTES (47)

AFFYMETRIX ANNOTATION
Probeset ID	AJ302661.1_s_at
Annotation Date	3/8/2007
Genome Version	February 2003 (IAGP v.MOZ2)
Alignments	chr3L:6528713-6529345 (-) // 99.43 //
Ensembl	ENSANGG00000014362
SwissProt	Q9BIH1
Annotation Description	This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
Annotation Transcript Cluster	XM_311365(11)
Transcript Assignments	ENSANGESTT00000008861 // --- // ensembl_est // 11 // --- /// BX053247 // Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC30DC11 of strain 6-9 of Anopheles gambiae (Afric
Annotation Notes	SNAP_ANOPHELES00000023404 // ensembl_prediction // 8 // Cross Hyb Matching Probes /// BX053248 // gb // 4 // Negative Strand Matching Probes

ANOXCEL ANNOTATION
Seq name	AGAP010647-PA
First residue	M
Description	pep:known chromosome:AgamP3:3L:7953733:7954808:-1 gene:AGAP010647 transcript:AGAP010647-RA
CDS name and link to nucleotide data	AGAP010647-RA
Description	cdna:known chromosome:AgamP3:3L:7953733:7954808:-1 gene:AGAP010647
Best match to AG-CDS	AGAP010647-RA
E value	4e-69
Score	255
Extent of match	128
Length of best match	998
% identity	100
% Match length	13
First residue of match - UTR overhang	45
First residue of sequence	1
Link to whole gene + 2000nt 5' + 200nt 3'	AGAP010647-PA
Link to 5' 2,000 nt	AGAP010647-PA
Link to 3' 200 nt	AGAP010647-PA
Gene name and view at Ensembl	AGAP010647
Protein view at Ensembl	AGAP010647-PA
Chromosome	3L
For or Rev	R
Location	complement(7954381..7954764)
Exon locations	7954381-7954764
Number of introns and link to fasta file	0
intron lengths	0
Start	7954381
End	7954764
Gene length	383
Protein size	128
Complexity index	0.33
Cys number	3
SigP Result	SIG
Cleavage Position	24-25
MW	14.404
pI	10.58
Mature MW	11.7
pI	10.13
TMHMM result	ExpAA=9.58 First60=9.58 PredHel=0 Topology=o
Predicted helices	0
Best match to NR protein database	gSG8-like protein
E value	4E-013
Match	gi\|94468374
Score	76.6
Extent of match	102
Length of best match	184
% identity	36
% Match length	55
First residue of match	47
First residue of sequence	27
Number of segments	1
Species	Aedes aegypti
Key words	GSG8-LIKE AEDES AEGYPTI GSG8 LIKE ASPERGILLUS TERREUS HYPOTHETICAL RHE_PD00071 RHIZOBIUM ETLI >GI CONSERVED ADENOSYLHOMOCYSTEINASE CAULOBACTER SP. K31 CALCIUM ATPASE ZEA MAYS VITIS VINIFERA
Best match to SWISSP database	Thiol:disulfide interchange protein dsbE (Cytochrome c biogenesis protein ccmG)
E value	0.99
Match	Q87BH3\|DSBE_XYLFT
Score	31.2
Extent of match	70
Length of best match	197
% identity	25
% Match length	36
First residue of match	124
First residue of sequence	24
Number of segments	1
PROSITE motifs	ASN_GLYCOSYLATION \|PKC_PHOSPHO_SITE \|CK2_PHOSPHO_SITE \|AMIDATION \|MICROBODIES_CTER \|RGD \|
Non promiscuous prosite motifs	RGD \|
Best match to GO database
E value
Function descriptors
Component descriptors
Process descriptors
Best match to KOG database	Trypsin
E value	0.062
General class	Amino acid transport and metabolism
Best match to PFAM database	Orbi_NS3
E value	0.55
Best match to SMART database	Tryp_SPc
E value	0.25
Best match to AEGY-PEP database	hypothetical protein
E value	0.42
Match	AAEL008589-RA
Score	29.3
Extent of match	47
Length of best match	695
% identity	31
% Match length	7
First residue of match	431
First residue of sequence	26
Number of segments	1
Best match to DMPROT database	Ac3-PC
E value	2.2
Match	Ac3-PC
Score	27.3
Extent of match	51
Length of best match	341
% identity	39
% Match length	15
First residue of match	129
First residue of sequence	3
Number of segments	1
Best match to CELEG database	gly-6 Glycosyl transferases status:Confirmed SW:O61394 protein_id:CAA19707.1
E value	1.6
Match	H38K22.5a
Score	27.7
Extent of match	48
Length of best match	618
% identity	25
% Match length	8
First residue of match	473
First residue of sequence	25
Number of segments	1
Best match to ARAB database	C2 domain-containing protein / armadillo/beta-catenin repeat family protein
E value	0.47
Match	gi\|15219352
Score	29.6
Extent of match	94
Length of best match	2114
% identity	23
% Match length	4
First residue of match	1726
First residue of sequence	30
Number of segments	1
Best match to YEAST database	gi\|4191\|emb\|CAA43922.1 (X61920) DNA polymerase III catalytic subunit
E value	0.15
Match	NR_SC:GP-CAA43922_1
Score	30
Extent of match	52
Length of best match	1097
% identity	34
% Match length	5
First residue of match	711
First residue of sequence	32
Number of segments	1
Best match to clusterized An. gambiae ESTs from different libraries	all-ests-contig_6072
E value	3e-69
Score	255
Extent of match	128
Length of best match	1051
% identity	100
% Match length	12
First residue of match	73
First residue of sequence	1
Number of segments	1
Orientation of output	FOR
Satisfied 95% id on length 100	Y
Number of sequences on assembled contig	7
ESTs coming from from all-instars library	0
Blood-abdomen library	0
Sugar-abd library	0
Infected blood-abd library	0
Big blood fed library	0
Big non blood fed library	1
Head library	0
Immune cells	0
normalized-fatbody	0
Female salivary glands (Ribeiro and Pasteur)	6
Male salivary glands	0
Best match to Affymetrix chip	AJ302661.1_at
E value	6E-69
Extent of match	128
% identity	100
Clustered at 35%-Sim- on 60% of length - - Cluster#	2083
# seqs	1
Clustered at 45%-Sim- on 60% of length - - Cluster#	2228
# seqs	1
Clustered at 55%-Sim- on 60% of length - - Cluster#	2246
# seqs	1
Clustered at 65%-Sim- on 60% of length - - Cluster#	2173
# seqs	1
Clustered at 75%-Sim- on 6% of length - - Cluster#	2034
# seqs	1
Clustered at 85%-Sim- on 60% of length - - Cluster#	1884
# seqs	1
Clustered at 95%-Sim- on 60% of length - - Cluster#	1743
# seqs	1