| Probeset ID
| AJ304410.1_s_at
| Current gene ID
| AGAP012068
(AGAP012068 is also associated with: Ag.3L.415.0_CDS_at - Ag.3L.415.1_CDS_a_at)
| Affymetrix transcript data
| AJ304410.1 /DEF=Anopheles gambiae partial mRNA for calpain. /DB_XREF=gi:15485211
| | |
| STAGE
| SIGNAL MEAN
| STD DEV
| L
| 920.5
| 67.75
| M
| 1798.17
| 113.76
| NBF
| 1318.8
| 41.35
| BF3h
| 829.93
| 77.61
| BF24h
| 880.7
| 9.93
| BF48h
| 941.07
| 33.91
| BF72h
| 980.17
| 54.9
| BF96h
| 1039.83
| 123.5
| BF15d
| 1161.6
| 128.61
| | | | | | | | | | |
|
| TISSUE
| SIGNAL MEAN
| STD DEV
| Fat bodies
| 1375.5
| 278.98
| Midgut
| 595.13
| 42.37
| Ovaries
| 724.3
| 17.06
| | | |
|
| 
|
AFFYMETRIX ANNOTATION
| Probeset ID
| AJ304410.1_s_at
| Annotation Date
| 3/8/2007
| Genome Version
| February 2003 (IAGP v.MOZ2)
| Alignments
| chr3L:36672592-36673152 (-) // 96.51 //
| Ensembl
| ENSANGG00000027952
| SwissProt
| Q95V12
| Gene Ontology Biological Process
| 0006508 // proteolysis // inferred from electronic annotation
| Gene Ontology Cellular Component
| 0005622 // intracellular // inferred from electronic annotation
| Gene Ontology Molecular Function
| 0004198 // calpain activity // inferred from electronic annotation
| InterPro
| IPR001300 // Peptidase C2, calpain // 1.8E-43
| Annotation Description
| This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
| Annotation Transcript Cluster
| XM_320456(11)
| Transcript Assignments
| AJ304410 // Anopheles gambiae partial mRNA for calpain. // gb // 11 // --- /// SNAP_ANOPHELES00000017286 // cdna:SNAP chromosome:AgamP3:3L:37346984:37354106:-1 // ensembl_prediction // 11 // --- /// ENSANGT00000032539 // cdna:known chromosome:AgamP3:3L:37
| | | | | | | | | | | | | |
ANOXCEL ANNOTATION
| Seq name
| AGAP012068-PA
| First residue
| P
| Description
| pep:known chromosome:AgamP3:3L:37346839:37361850:-1 gene:AGAP012068 transcript:AGAP012068-RA
| CDS name and link to nucleotide data
| AGAP012068-RA
| Description
| cdna:known chromosome:AgamP3:3L:37346839:37361850:-1 gene:AGAP012068
| Best match to AG-CDS
| AGAP012068-RA
| E value
| 0
| Score
| 1699
| Extent of match
| 815
| Length of best match
| 2593
| % identity
| 100
| % Match length
| 31
| First residue of match - UTR overhang
| 1
| First residue of sequence
| 1
| Link to whole gene + 2000nt 5' + 200nt 3'
| AGAP012068-PA
| Link to 5' 2,000 nt
| AGAP012068-PA
| Link to 3' 200 nt
| AGAP012068-PA
| Gene name and view at Ensembl
| AGAP012068
| Protein view at Ensembl
| AGAP012068-PA
| Chromosome
| 3L
| For or Rev
| R
| Location
| join(complement(37361488..37361850),complement(37351829..37353358),complement(37351619..37351760),complement(37347156..37347482),complement(37346984..37347069))
| Exon locations
| 37361488-37361850 37351829-37353358 37351619-37351760 37347156-37347482 37346984-37347069
| Number of introns and link to fasta file
| 4
| intron lengths
| 8130 69 4137 87
| Start
| 37346984
| End
| 37361850
| Gene length
| 14866
| Protein size
| 815
| Complexity index
| 0.22
| Cys number
| 14
| SigP Result
| CYT
| MW
| 92.263
| pI
| 4.68
| TMHMM result
| ExpAA=0.00 First60=0.00 PredHel=0 Topology=o
| Predicted helices
| 0
| Best match to NR protein database
| calpa
| E value
| 0.0
| Match
| gi|108880479
| Score
| 1258
| Extent of match
| 712
| Length of best match
| 794
| % identity
| 83
| % Match length
| 90
| First residue of match
| 84
| First residue of sequence
| 104
| Number of segments
| 1
| Species
| Aedes aegypti
| Key words
| CALPAIN AEDES AEGYPTI CALPAIN-B CG8107-PA DROSOPHILA MELANOGASTER >GI CANB_DROME B CALCIUM-ACTIVATED NEUTRAL PROTEINASE CANP CONTAINS CATALYTIC SUBUNIT 1 2 CALCIUM ACTIVATED PSEUDOOBSCURA GECARCINUS LATERALIS SIMILAR TO TRIBOLIUM CASTANEUM CALPAIN-A CG7563-PB ISOFORM CANA_DROME A EC LARGE CHAIN FRUIT FLY CG7563-PA WITHOUT CALMODULIN-LIKE DOMAIN CALMODULIN LIKE SJCHGC01809 SCHISTOSOMA JAPONICUM 3 C HOMO SAPIENS PROTEASE CAPN3 CL1 CRA_E 16 CANIS FAMILIARIS CALPAIN-3 L3 P94 MUSCLE-SPECIFIC 7 MUSCLE SPECIFIC MUS MUSCULUS 19 LP82 RATTUS NORVEGICUS HYPOTHETICAL DANIO RERIO GILL-SPECIFIC ONCORHYNCHUS MYKISS GILL
| Best match to SWISSP database
| Calpain B (EC 3.4.22.-) (Calcium-activated neutral proteinase B) (CANP B)
| E value
| 0.0
| Match
| Q9VT65|CANB_DROME
| Score
| 1088
| Extent of match
| 845
| Length of best match
| 925
| % identity
| 62
| % Match length
| 91
| First residue of match
| 87
| First residue of sequence
| 1
| Number of segments
| 1
| PROSITE motifs
| ASN_GLYCOSYLATION |CAMP_PHOSPHO_SITE |PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |TYR_PHOSPHO_SITE |MYRISTYL |PRENYLATION |ER_TARGET |MICROBODIES_CTER |EF_HAND_1 |THIOL_PROTEASE_CYS |
| Non promiscuous prosite motifs
| ER_TARGET |EF_HAND_1 |THIOL_PROTEASE_CYS |
| Best match to GO database
| Calpain-B - Drosophila melanogaster - proteolysis - calcium ion binding - calpain activity - cytoplasm - membrane - protein autoprocessing
| E value
|
| Function descriptors
| calcium ion binding||metal ion binding||ion binding||binding
| Function parent
| binding
| Function second parent
| ion binding
| GO #
| GO:0005509
| E value of functional GO
| 0
| Component descriptors
| cytoplasm||prospore||immature spore
| Component parent
| immature spore
| Component second parent
| prospore
| GO #
| GO:0005737
| E value of component GO
| 0
| Process descriptors
| proteolysis||cellular protein metabolism||cellular macromolecule metabolism||cellular metabolism||cellular physiological process
| Process parent
| binding
| Process second parent
| ion binding
| GO #
| GO:0006508
| E value of process GO
| 0
| Best match to KOG database
| Cytosolic Ca2+-dependent cysteine protease (calpai
| E value
| 1E-168
| General class
| Posttranslational modification, protein turnover, chaperones, Signal transduction mechanisms
| Best match to PFAM database
| Peptidase_C2
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