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Probeset ID Ag.2L.10.0_CDS_at
Current gene ID AGAP006187
Affymetrix transcript data ENSANGT00000017713 /FEA=ENS /TIER=CDS /DEF=PROTEIN G12 PRECURSOR (ANG12). (Source:SWISSPROT;Acc:Q17040) /GEN=G12_ANOGA /ANNOT=ENSANGT00000017713 /EVID_CNT=86 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.10 /SEG=chr2L:+27362249,27363198


STAGE SIGNAL MEAN STD DEV
L 6869.87 3334.25
M 190.97 37.8
NBF 186.7 24.78
BF3h 250.63 12.26
BF24h 50479 1574.59
BF48h 369.3 105.77
BF72h 150.07 13.8
BF96h 217.2 84.83
BF15d 212.93 40.13
TISSUE SIGNAL MEAN STD DEV
Fat bodies 4621.2 7092.33
Midgut 128234.37 14557.44
Ovaries 91.6 7.02


ENSEMBL ANNOTATION
VECTORBASE ANNOTATION
USER-CONTRIBUTED NOTES (0)

AFFYMETRIX ANNOTATION
Probeset ID Ag.2L.10.0_CDS_at
Annotation Date 3/8/2007
Target Description ens:ENSANGT00000017713 /FEA=ENS /TIER=CDS /DEF=PROTEIN G12 PRECURSOR (ANG12). (Source:SWISSPROT;Acc:Q17040) /GEN=G12_ANOGA /ANNOT=ens:ENSANGT00000017713 /EVID_CNT=86 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.10 /SEG=chr2L:+27362249,27363198
Genome Version February 2003 (IAGP v.MOZ2)
Alignments chr2L:27362249-27363198 (+) // 100.0 //
Ensembl ENSANGG00000015224
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
Annotation Transcript Cluster XM_316252(11)
Transcript Assignments ENSANGESTT00000004259 // --- // ensembl_est // 11 // --- /// ENSANGESTT00000004260 // --- // ensembl_est // 11 // --- /// SNAP_ANOPHELES00000005992 // cdna:SNAP chromosome:AgamP3:2L:27931576:27932371:1 // ensembl_prediction // 10 // --- /// ENSANGT0000001
Annotation Notes ENSANGESTT00000004261 // ensembl_est // 8 // Cross Hyb Matching Probes /// ENSANGESTT00000004262 // ensembl_est // 8 // Cross Hyb Matching Probes

ANOXCEL ANNOTATION
Seq name AGAP006187-PA
First residue M
Description pep:known chromosome:AgamP3:2L:27931493:27932433:1 gene:AGAP006187 transcript:AGAP006187-RA
CDS name and link to nucleotide data AGAP006187-RA
Description cdna:known chromosome:AgamP3:2L:27931493:27932433:1 gene:AGAP006187
Best match to AG-CDS AGAP006187-RA
E value 1e-116
Score 412
Extent of match 211
Length of best match 781
% identity 100
% Match length 27
First residue of match - UTR overhang 84
First residue of sequence 1
Link to whole gene + 2000nt 5' + 200nt 3' AGAP006187-PA
Link to 5' 2,000 nt AGAP006187-PA
Link to 3' 200 nt AGAP006187-PA
Gene name and view at Ensembl AGAP006187
Protein view at Ensembl AGAP006187-PA
Chromosome 2L
For or Rev F
Location join(27931576..27931930,27932022..27932200,27932270..27932371)
Exon locations 27931576-27931930 27932022-27932200 27932270-27932371
Number of introns and link to fasta file 2
intron lengths 92 70
Start 27931576
End 27932371
Gene length 795
Protein size 211
Complexity index 0.39
Cys number 2
SigP Result SIG
Cleavage Position 19-20
MW 23.654
pI 4.42
Mature MW 21.699
pI 4.37
TMHMM result ExpAA=7.72 First60=7.71 PredHel=0 Topology=o
Predicted helices 0
Best match to NR protein database ANG12 precursor
E value 1E-113
Match gi|311985
Score 410
Extent of match 211
Length of best match 211
% identity 99
% Match length 100
First residue of match 1
First residue of sequence 1
Number of segments 1
Species Anopheles gambiae
Key words ANG12 PRECURSOR ANOPHELES GAMBIAE CONSERVED HYPOTHETICAL AEDES AEGYPTI MICROVILLI MEMBRANE >GI MAJOR ALLERGEN PER A PERIPLANETA AMERICANA BLA G 1.02 BLATTELLA GERMANICA CR-PII CR PII
Best match to SWISSP database Protein G12 precursor (ANG12) - Anopheles gambiae (African malaria mosquito)
E value 1E-115
Match Q17040|G12_ANOGA
Score 412
Extent of match 211
Length of best match 211
% identity 100
% Match length 100
First residue of match 1
First residue of sequence 1
Number of segments 1
PROSITE motifs PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |MYRISTYL |PRENYLATION |MICROBODIES_CTER |
Best match to GO database
E value
Function descriptors
Component descriptors
Process descriptors
Best match to KOG database
E value
Best match to PFAM database Ins_allergen_rp
E value 9E-019
Best match to AEGY-PEP database conserved hypothetical protein
E value 1e-55
Match AAEL013127-RB
Score 211
Extent of match 211
Length of best match 211
% identity 51
% Match length 100
First residue of match 3
First residue of sequence 4
Number of segments 2
Best match to DMPROT database CG15712-PA
E value 4E-016
Match CG15712-PA
Score 81.3
Extent of match 211
Length of best match 214
% identity 25
% Match length 99
First residue of match 7
First residue of sequence 8
Number of segments 1
Best match to CELEG database Partially_confirmed TR:Q9N330 protein_id:AAF60824.1 Length = 1100 Score = 30.0
E value 0.85
Match Y59E9AL.4
Score 30
Extent of match 70
Length of best match 1100
% identity 21
% Match length 6
First residue of match 423
First residue of sequence 128
Number of segments 1
Best match to ARAB database structural maintenance of chromosomes (SMC) family prote
E value 0.16
Match AT5G07660.1
Score 32.7
Extent of match 100
Length of best match 1058
% identity 24
% Match length 9
First residue of match 703
First residue of sequence 115
Number of segments 1
Best match to YEAST database SW:YMM8_YEAST Q03104 saccharomyces cerevisiae (baker's yeast). hypothetical 59.6
E value 1.1
Match NR_SC:SW-YMM8_YEAST
Score 28.5
Extent of match 33
Length of best match 513
% identity 33
% Match length 6
First residue of match 437
First residue of sequence 66
Number of segments 1
Best match to clusterized An. gambiae ESTs from different libraries all-ests-contig_1110
E value 1e-116
Score 412
Extent of match 211
Length of best match 837
% identity 100
% Match length 25
First residue of match 140
First residue of sequence 1
Number of segments 1
Orientation of output FOR
Satisfied 95% id on length 100 Y
Number of sequences on assembled contig 88
ESTs coming from from all-instars library 3
Blood-abdomen library 0
Sugar-abd library 0
Infected blood-abd library 0
Big blood fed library 85
Big non blood fed library 0
Head library 0
Immune cells 0
normalized-fatbody 0
Female salivary glands (Ribeiro and Pasteur) 0
Male salivary glands 0
Best match to Affymetrix chip Ag.2L.10.0_CDS_at
E value 1E-112
Extent of match 211
% identity 97
Clustered at 35%-Sim- on 60% of length - - Cluster# 0
# seqs 0
Clustered at 45%-Sim- on 60% of length - - Cluster# 0
# seqs 0
Clustered at 55%-Sim- on 60% of length - - Cluster# 4886
# seqs 1
Clustered at 65%-Sim- on 60% of length - - Cluster# 5110
# seqs 1
Clustered at 75%-Sim- on 6% of length - - Cluster# 5207
# seqs 1
Clustered at 85%-Sim- on 60% of length - - Cluster# 5250
# seqs 1
Clustered at 95%-Sim- on 60% of length - - Cluster# 5269
# seqs 1



User Contributed Notes
(Disclaimer: The following notes have not been reviewed or verified by this site's authors and thus the validity of their contents are left for the site's users to decide.)

Ag.2L.10.0_CDS_at


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