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Probeset ID Ag.2L.100.0_CDS_at
Current gene ID AGAP006156
Affymetrix transcript data ENSANGT00000017114 /FEA=ENS /TIER=CDS /GEN=GPRmgl1 /ANNOT=ENSANGT00000017114 /EVID_CNT=1 /EVID_TYPE=ENS /GENE_CLUSTER=AffxAg.100 /SEG=chr2L:+26739351,26754286


STAGE SIGNAL MEAN STD DEV
L 34.03 16.27
M 167.9 44.26
NBF 66.63 23.98
BF3h 63.7 53.53
BF24h 49.93 30.25
BF48h 53.13 25.18
BF72h 30.27 18.6
BF96h 58.13 10.08
BF15d 82.8 44.45
TISSUE SIGNAL MEAN STD DEV
Fat bodies 144.47 34.85
Midgut 160.73 120.03
Ovaries 33.97 20.6


ENSEMBL ANNOTATION
VECTORBASE ANNOTATION
USER-CONTRIBUTED NOTES (0)

AFFYMETRIX ANNOTATION
Probeset ID Ag.2L.100.0_CDS_at
Annotation Date 3/8/2007
Target Description ens:ENSANGT00000017114 /FEA=ENS /TIER=CDS /GEN=GPRmgl1 /ANNOT=ens:ENSANGT00000017114 /EVID_CNT=1 /EVID_TYPE=ENS /GENE_CLUSTER=AffxAg.100 /SEG=chr2L:+26739351,26754286
Genome Version February 2003 (IAGP v.MOZ2)
Alignments chr2L:26739351-26754286 (+) // 100.0 //
Ensembl ENSANGG00000014625
Trans Membrane ENSANGP00000017114 // span:15-37,58-80,98-120,133-155,165-184 // numtm:5
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
Annotation Transcript Cluster XM_316213(11)
Transcript Assignments ENSANGT00000017114 // cdna:known chromosome:AgamP3:2L:27308590:27323533:1 gene:ENSANGG00000014625 // ensembl_transcript // 11 // --- /// XM_316213 // Anopheles gambiae str. PEST ENSANGP00000017114 (ENSANGG00000014625), partial mRNA. // refseq // 11 // ---
Annotation Notes SNAP_ANOPHELES00000009076 // ensembl_prediction // 1 // Cross Hyb Matching Probes /// SNAP_ANOPHELES00000009080 // ensembl_prediction // 5 // Cross Hyb Matching Probes

ANOXCEL ANNOTATION
Seq name AGAP006156-PA
First residue M
Description pep:known chromosome:AgamP3:2L:27308590:27323533:1 gene:AGAP006156 transcript:AGAP006156-RA
CDS name and link to nucleotide data AGAP006156-RA
Description cdna:known chromosome:AgamP3:2L:27308590:27323533:1 gene:AGAP006156
ATG? ATG
Stop? *
Best match to AG-CDS AGAP006156-RA
E value 1e-145
Score 509
Extent of match 254
Length of best match 765
% identity 100
% Match length 33
First residue of match - UTR overhang 1
First residue of sequence 1
Link to whole gene + 2000nt 5' + 200nt 3' AGAP006156-PA
Link to 5' 2,000 nt AGAP006156-PA
Link to 3' 200 nt AGAP006156-PA
Gene name and view at Ensembl AGAP006156
Protein view at Ensembl AGAP006156-PA
Chromosome 2L
For or Rev F
Location join(27308590..27308690,27309193..27309407,27314151..27314289,27321634..27321739,27323330..27323533)
Exon locations 27308590-27308690 27309193-27309407 27314151-27314289 27321634-27321739 27323330-27323533
Number of introns and link to fasta file 4
intron lengths 503 4744 7345 1591
Start 27308590
End 27323533
Gene length 14943
Protein size 254
Complexity index 0.29
Cys number 6
SigP Result CYT
MW 28.274
pI 9.72
TMHMM result ExpAA=108.86 First60=24.61 PredHel=5 Topology=o15-37i58-80o98-120i133-155o165-184i
Predicted helices 5
% membrane 42.1
% outside 16.9
% inside 40.9
Best match to NR protein database IP09654p
E value 1E-110
Match gi|117935507
Score 400
Extent of match 238
Length of best match 710
% identity 83
% Match length 34
First residue of match 96
First residue of sequence 1
Number of segments 1
Species Drosophila melanogaster
Key words DROSOPHILA MELANOGASTER PSEUDOOBSCURA >GI SIMILAR TO TRIBOLIUM CASTANEUM PARTIAL APIS MELLIFERA CONSERVED HYPOTHETICAL AEDES AEGYPTI STRONGYLOCENTROTUS PURPURATUS GPR158-LIKE CANIS FAMILIARIS TROGLODYTES RECEPTOR HOMO SAPIENS Q6PRD1 GP179_HUMAN PROBABLE G-PROTEIN COUPLED 179 PRECURSOR 158-LIKE MONODELPHIS DOMESTICA G 158 LIKE DANIO RERIO UNKNOWN FOR IMAGE XENOPUS TROPICALIS RATTUS NORVEGICUS MUS MUSCULUS ISOFORM 4 BOS TAURUS PROTEIN-COUPLED A MACACA MULATTA
Best match to SWISSP database Probable G-protein coupled receptor 179 precursor (Probable G-protein coupled
E value 4E-028
Match Q6PRD1|GP179_HUMAN
Score 124
Extent of match 197
Length of best match 2367
% identity 35
% Match length 8
First residue of match 436
First residue of sequence 1
Number of segments 1
PROSITE motifs ASN_GLYCOSYLATION |PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |MYRISTYL |PRENYLATION |MICROBODIES_CTER |
Best match to GO database G protein-coupled receptor 158 - Mus musculus - membrane - integral to membrane - metabotropic glutamate, GABA-B-like receptor activity - G-protein coupled receptor protein signaling pathway
E value E-2
Function descriptors metabotropic glutamate\, GABA-B-like receptor activity||G-protein coupled receptor activity||transmembrane receptor activity||receptor activity||signal transducer activity
Function parent signal transducer activity
Function second parent receptor activity
GO # GO:0008067
E value of functional GO 2e-24
Component descriptors membrane
Component parent membrane
GO # GO:0016020
E value of component GO 2e-24
Process descriptors G-protein coupled receptor protein signaling pathway||cell surface receptor linked signal transduction||signal transduction||cell communication||cellular process
Process parent signal transducer activity
Process second parent receptor activity
GO # GO:0007186
E value of process GO 2e-24
Best match to KOG database Predicted membrane protein
E value 6E-074
General class Function unknown
Best match to PFAM database 7tm_3
E value 3E-010
Best match to AEGY-PEP database conserved hypothetical protein
E value 2e-39
Match AAEL004533-RA
Score 158
Extent of match 200
Length of best match 577
% identity 42
% Match length 35
First residue of match 237
First residue of sequence 1
Number of segments 1
Best match to DMPROT database CG18678-PA
E value 1E-110
Match CG18678-PA
Score 393
Extent of match 244
Length of best match 264
% identity 81
% Match length 92
First residue of match 1
First residue of sequence 1
Number of segments 1
Best match to CELEG database Partially_confirmed TR:O45500 protein_id:CAB07388.2 Length = 594 Score = 94.4
E value 5E-020
Match F39B2.8
Score 94.4
Extent of match 187
Length of best match 594
% identity 32
% Match length 31
First residue of match 269
First residue of sequence 5
Number of segments 1
Best match to ARAB database expressed protein | chr3:44491-45597 REVERSE | Aliases: T4P13.
E value 4.0
Match AT3G01130.1
Score 28.5
Extent of match 51
Length of best match 53
% identity 37
% Match length 96
First residue of match 1
First residue of sequence 1
Number of segments 1
Best match to YEAST database SW:YKO6_YEAST P36062 saccharomyces cerevisiae (baker's yeast). hypothetical 75.5
E value 9.8
Match NR_SC:SW-YKO6_YEAST
Score 25.8
Extent of match 205
Length of best match 692
% identity 23
% Match length 30
First residue of match 367
First residue of sequence 1
Number of segments 1
Best match to Affymetrix chip Ag.2L.100.0_CDS_at
E value 1E-144
Extent of match 252
% identity 100
Clustered at 35%-Sim- on 60% of length - - Cluster# 0
# seqs 0
Clustered at 45%-Sim- on 60% of length - - Cluster# 4561
# seqs 1
Clustered at 55%-Sim- on 60% of length - - Cluster# 4864
# seqs 1
Clustered at 65%-Sim- on 60% of length - - Cluster# 5084
# seqs 1
Clustered at 75%-Sim- on 6% of length - - Cluster# 5180
# seqs 1
Clustered at 85%-Sim- on 60% of length - - Cluster# 5223
# seqs 1
Clustered at 95%-Sim- on 60% of length - - Cluster# 5239
# seqs 1



User Contributed Notes
(Disclaimer: The following notes have not been reviewed or verified by this site's authors and thus the validity of their contents are left for the site's users to decide.)

Ag.2L.100.0_CDS_at


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