| Probeset ID
| Ag.2L.1000.0_CDS_at
| Current gene ID
| AGAP006499
| Affymetrix transcript data
| ENSANGT00000025896 /FEA=ENS /TIER=CDS /ANNOT=ENSANGT00000025896 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1000 /SEG=chr2L:-32514216,32515174
| | |
| STAGE
| SIGNAL MEAN
| STD DEV
| L
| 42.4
| 27.06
| M
| 95.5
| 105.32
| NBF
| 33.9
| 9.97
| BF3h
| 4802.13
| 492.18
| BF24h
| 69.23
| 42.43
| BF48h
| 14.67
| 4.09
| BF72h
| 7.03
| 0.91
| BF96h
| 10.47
| 0.68
| BF15d
| 8.83
| 1.16
| | | | | | | | | | |
|
| TISSUE
| SIGNAL MEAN
| STD DEV
| Fat bodies
| 43.03
| 13.86
| Midgut
| 19.63
| 4.82
| Ovaries
| 22.5
| 10.56
| | | |
|
| 
|
AFFYMETRIX ANNOTATION
| Probeset ID
| Ag.2L.1000.0_CDS_at
| Annotation Date
| 3/8/2007
| Target Description
| ens:ENSANGT00000025896 /FEA=ENS /TIER=CDS /ANNOT=ens:ENSANGT00000025896 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1000 /SEG=chr2L:-32514216,32515174
| Genome Version
| February 2003 (IAGP v.MOZ2)
| Alignments
| chr2L:32514216-32515174 (-) // 65.09 //
| Ensembl
| ENSANGG00000023091
| Trans Membrane
| ENSANGESTP00000003190 // span:5-27 // numtm:1 /// ENSANGP00000028253 // span:5-27 // numtm:1
| Annotation Description
| This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
| Annotation Transcript Cluster
| XM_557177(11)
| Transcript Assignments
| ENSANGESTT00000003190 // --- // ensembl_est // 11 // --- /// SNAP_ANOPHELES00000024544 // cdna:SNAP chromosome:AgamP3:2L:33082573:33084332:-1 // ensembl_prediction // 9 // --- /// ENSANGT00000025896 // cdna:novel chromosome:AgamP3:2L:33083455:33084412:-1
| | | | | | | | | | |
ANOXCEL ANNOTATION
| Seq name
| AGAP006499-PA
| First residue
| M
| Description
| pep:novel chromosome:AgamP3:2L:33083455:33084412:-1 gene:AGAP006499 transcript:AGAP006499-RA
| CDS name and link to nucleotide data
| AGAP006499-RA
| Description
| cdna:novel chromosome:AgamP3:2L:33083455:33084412:-1 gene:AGAP006499
| Best match to AG-CDS
| AGAP006499-RA
| E value
| 1e-123
| Score
| 436
| Extent of match
| 210
| Length of best match
| 865
| % identity
| 100
| % Match length
| 24
| First residue of match - UTR overhang
| 81
| First residue of sequence
| 1
| Link to whole gene + 2000nt 5' + 200nt 3'
| AGAP006499-PA
| Link to 5' 2,000 nt
| AGAP006499-PA
| Link to 3' 200 nt
| AGAP006499-PA
| Gene name and view at Ensembl
| AGAP006499
| Protein view at Ensembl
| AGAP006499-PA
| Chromosome
| 2L
| For or Rev
| R
| Location
| join(complement(33083723..33084332),complement(33083607..33083629))
| Exon locations
| 33083723-33084332 33083607-33083629
| Number of introns and link to fasta file
| 1
| intron lengths
| 94
| Start
| 33083607
| End
| 33084332
| Gene length
| 725
| Protein size
| 210
| Complexity index
| 0.86
| Increased AA (fold over average usage)
| A(3.29)P(3.67)
| Cys number
| 2
| SigP Result
| SIG
| Cleavage Position
| 20-21
| MW
| 20.862
| pI
| 8.46
| Mature MW
| 18.866
| pI
| 8.56
| TMHMM result
| ExpAA=16.56 First60=16.32 PredHel=1 Topology=i5-27o
| Predicted helices
| 1
| % membrane
| 10.5
| % outside
| 87.1
| % inside
| 2.4
| Best match to NR protein database
| CG2962-PA
| E value
| 1E-036
| Match
| gi|24640971
| Score
| 155
| Extent of match
| 192
| Length of best match
| 376
| % identity
| 58
| % Match length
| 51
| First residue of match
| 39
| First residue of sequence
| 35
| Number of segments
| 5
| Species
| Drosophila melanogaster] melanogaster
| Key words
| CG2962-PA DROSOPHILA MELANOGASTER >GI ISOFORM A HYPOTHETICAL BPRO_1435 POLAROMONAS SP. PRECURSOR XENOPUS LAEVIS XP2_XENLA SKIN SECRETORY XP2 APEG CHORION S18 CERATITIS CAPITATA CONSERVED TRICHOMONAS VAGINALIS G3 SIMILAR TO TELOMERIC REPEAT BINDING FACTOR NIMA-INTERACTING 1 MONODELPHIS DOMESTICA NIMA INTERACTING ACIDITHIOBACILLUS FERROOXIDANS CAENORHABDITIS ELEGANS EYESPOT GLOBULE-ASSOCIATED SPERMATOZOPSIS SIMILIS GLOBULE ASSOCIATED TRIBOLIUM CASTANEUM YARROWIA LIPOLYTICA UNNAMED PRODUCT CLIB122 PROLINE-RICH EXTENSIN ARABIDOPSIS THALIANA UNKNOWN PROLINE RICH LEUCINE-RICH FAMILY EXTENSIN-LIKE LEUCINE LIKE BDELLOVIBRIO BACTERIOVORUS MAGNAPORTHE GRISEA
| Best match to SWISSP database
| Skin secretory protein xP2 precursor (Protein APEG) - Xenopus laevis (African
| E value
| 2E-033
| Match
| P17437|XP2_XENLA
| Score
| 141
| Extent of match
| 127
| Length of best match
| 439
| % identity
| 58
| % Match length
| 29
| First residue of match
| 23
| First residue of sequence
| 59
| Number of segments
| 16
| PROSITE motifs
| CK2_PHOSPHO_SITE |MYRISTYL |PRENYLATION |MICROBODIES_CTER |
| Best match to GO database
| Arabidopsis thaliana - cellulose and pectin-containing cell wall - structural constituent of cell wall - protein binding
| E value
| E-2
| Function descriptors
| histidine phosphotransfer kinase activity||kinase activity||transferase activity\, transferring phosphorus-containing groups||transferase activity||catalytic activity
| Function parent
| catalytic activity
| Function second parent
| transferase activity
| GO #
| GO:0009927
| E value of functional GO
| 5e-20
| Component descriptors
| cell wall (sensu Magnoliophyta)||cell wall||external encapsulating structure
| Component parent
| external encapsulating structure
| Component second parent
| cell wall
| GO #
| GO:0009505
| E value of component GO
| 5e-20
| Process descriptors
|
| Process parent
| catalytic activity
| Process second parent
| transferase activity
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
