| Probeset ID
| Ag.2L.1001.0_UTR_a_at
| Current gene ID
| AGAP006512
(AGAP006512 is also associated with: Ag.2L.1001.0_CDS_a_at)
| Affymetrix transcript data
| ENSANGT00000026686 /FEA=ENS /TIER=UTR /ANNOT=ENSANGT00000026686 ENSANGT00000028262 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1001 /SEG=chr2L:-32723884,32728216
| | |
| STAGE
| SIGNAL MEAN
| STD DEV
| L
| 229.73
| 47.34
| M
| 424.63
| 14.95
| NBF
| 347.6
| 24.68
| BF3h
| 197.03
| 21.7
| BF24h
| 109.83
| 27.88
| BF48h
| 232.93
| 64.14
| BF72h
| 188.7
| 17.53
| BF96h
| 262.53
| 51.21
| BF15d
| 269.3
| 80.07
| | | | | | | | | | |
|
| TISSUE
| SIGNAL MEAN
| STD DEV
| Fat bodies
| 207.7
| 40.78
| Midgut
| 121.17
| 124.49
| Ovaries
| 26.47
| 8.64
| | | |
|
| 
|
AFFYMETRIX ANNOTATION
| Probeset ID
| Ag.2L.1001.0_UTR_a_at
| Annotation Date
| 3/8/2007
| Target Description
| ens:ENSANGT00000026686 /FEA=ENS /TIER=UTR /ANNOT=ens:ENSANGT00000026686 ens:ENSANGT00000028262 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1001 /SEG=chr2L:-32723884,32728216
| Genome Version
| February 2003 (IAGP v.MOZ2)
| Alignments
| chr2L:32723884-32728216 (-) // 96.46 //
| Annotation Description
| This probe set was annotated using the Genome Target Overlap based pipeline to a Entrez Gene identifier using 2 transcripts. // true // Genome Target Overlap // B
| Annotation Transcript Cluster
| ENSANGT00000026686,SNAP_ANOPHELES00000016624,ENSANGT00000009987,XM_316540,XM_557192
| Transcript Assignments
| ENSANGESTT00000003184 // --- // ensembl_est // 11 // --- /// XM_557191 // Anopheles gambiae str. PEST ENSANGP00000028796 (ENSANGG00000024059), partial mRNA. // refseq // 11 // ---
| Annotation Notes
| ENSANGESTT00000003183 // ensembl_est // 2 // Cross Hyb Matching Probes /// SNAP_ANOPHELES00000016622 // ensembl_prediction // 7 // Cross Hyb Matching Probes /// SNAP_ANOPHELES00000016624 // ensembl_prediction // 2 // Cross Hyb Matching Probes
| | | | | | | | | |
ANOXCEL ANNOTATION
| Seq name
| AGAP006512-PA
| First residue
| M
| Description
| pep:novel chromosome:AgamP3:2L:33294343:33297273:-1 gene:AGAP006512 transcript:AGAP006512-RA
| CDS name and link to nucleotide data
| AGAP006512-RA
| Description
| cdna:novel chromosome:AgamP3:2L:33294343:33297273:-1 gene:AGAP006512
| ATG?
| ATG
| Best match to AG-CDS
| AGAP006512-RA
| E value
| 0
| Score
| 790
| Extent of match
| 390
| Length of best match
| 1180
| % identity
| 100
| % Match length
| 33
| First residue of match - UTR overhang
| 1
| First residue of sequence
| 1
| Link to whole gene + 2000nt 5' + 200nt 3'
| AGAP006512-PA
| Link to 5' 2,000 nt
| AGAP006512-PA
| Link to 3' 200 nt
| AGAP006512-PA
| Gene name and view at Ensembl
| AGAP006512
| Protein view at Ensembl
| AGAP006512-PA
| Chromosome
| 2L
| For or Rev
| R
| Location
| join(complement(33297118..33297273),complement(33296602..33296892),complement(33296344..33296518),complement(33296035..33296273),complement(33294350..33294661))
| Exon locations
| 33297118-33297273 33296602-33296892 33296344-33296518 33296035-33296273 33294350-33294661
| Number of introns and link to fasta file
| 4
| intron lengths
| 226 84 71 1374
| Start
| 33294350
| End
| 33297273
| Gene length
| 2923
| Protein size
| 390
| Complexity index
| 0.23
| Cys number
| 3
| SigP Result
| CYT
| MW
| 42.704
| pI
| 5.56
| TMHMM result
| ExpAA=22.56 First60=0.00 PredHel=1 Topology=o83-105i
| Predicted helices
| 1
| % membrane
| 5.6
| % outside
| 21.3
| % inside
| 73.1
| Best match to NR protein database
| conserved hypothetical protein
| E value
| 3E-096
| Match
| gi|108879773
| Score
| 355
| Extent of match
| 395
| Length of best match
| 369
| % identity
| 55
| % Match length
| 107
| First residue of match
| 17
| First residue of sequence
| 1
| Number of segments
| 1
| Species
| Aedes aegypti
| Key words
| CONSERVED HYPOTHETICAL AEDES AEGYPTI DROSOPHILA PSEUDOOBSCURA >GI MELANOGASTER SIMILAR TO TRIBOLIUM CASTANEUM AXOTACTIN MELLIFERA MAGNAPORTHE GRISEA FEMALE STERILE 1 K10 CG3218-PA K10_DROME DNA-BINDING BINDING MGCH7_CH7G370 MICROTUBULE-ASSOCIATED 4 MONODELPHIS DOMESTICA MICROTUBULE ASSOCIATED GAMMA-AMINOBUTYRIC ACID GABA-A RECEPTOR SUBUNIT EPSILON HOMO SAPIENS GAMMA AMINOBUTYRIC GABA A COPRINOPSIS CINEREA OKAYAMA7#130 PROLINE-RICH EXTENSIN-LIKE FAMILY ARABIDOPSIS THALIANA PROLINE RICH EXTENSIN LIKE ZEA MAYS DOMAIN DANIO RERIO ISOFORM B
| Best match to SWISSP database
| DNA-binding protein K10 (Female sterile protein K10) - Drosophila melanogaster
| E value
| 6E-005
| Match
| P13468|K10_DROME
| Score
| 48.1
| Extent of match
| 137
| Length of best match
| 463
| % identity
| 28
| % Match length
| 30
| First residue of match
| 161
| First residue of sequence
| 234
| Number of segments
| 1
| PROSITE motifs
| ASN_GLYCOSYLATION |PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |MYRISTYL |PRENYLATION |MICROBODIES_CTER |
| Best match to GO database
| female sterile (1) K10 - Drosophila melanogaster - DNA binding - nucleus - dorsal/ventral pattern formation - intracellular mRNA localization - protein localization - oogenesis (sensu Insecta) - ovarian follicle cell development (sensu Insecta) - oocyte dorsal/ventral axis determination (sensu Insecta) - pole plasm mRNA localization
| E value
| .0000
| Function descriptors
| DNA binding||nucleic acid binding||binding
| Function parent
| binding
| Function second parent
| nucleic acid binding
| GO #
| GO:0003677
| E value of functional GO
| 2e-05
| Component descriptors
| nucleus||intracellular membrane-bound organelle||intracellular organelle||prospore||immature spore
| Component parent
| immature spore
| Component second parent
| prospore
| GO #
| GO:0005634
| E value of component GO
| 2e-05
| Process descriptors
| dorsal/ventral pattern formation||pattern specification||development
| Process parent
| binding
| Process second parent
| nucleic acid binding
| GO #
| GO:0009953
| E value of process GO
| 2e-05
| Best match to KOG database
| C2H2-type Zn-finger protein
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
