| Probeset ID
| Ag.2L.1001.2_CDS_at
| Current gene ID
| AGAP006513
| Affymetrix transcript data
| ENSANGT00000009987 /FEA=ENS /TIER=CDS /ANNOT=ENSANGT00000009987 /EVID_CNT=2 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1001 /SEG=chr2L:-32728156,32745100
| | |
| STAGE
| SIGNAL MEAN
| STD DEV
| L
| 212.17
| 18.48
| M
| 393.83
| 82.32
| NBF
| 306.97
| 51.8
| BF3h
| 249.6
| 91.36
| BF24h
| 58.67
| 17.31
| BF48h
| 135.23
| 54.18
| BF72h
| 85.73
| 20.97
| BF96h
| 193.6
| 63.5
| BF15d
| 269.8
| 32.41
| | | | | | | | | | |
|
| TISSUE
| SIGNAL MEAN
| STD DEV
| Fat bodies
| 27.7
| 17.45
| Midgut
| 19.67
| 3.68
| Ovaries
| 7.5
| 1.92
| | | |
|
| 
|
AFFYMETRIX ANNOTATION
| Probeset ID
| Ag.2L.1001.2_CDS_at
| Annotation Date
| 3/8/2007
| Target Description
| ens:ENSANGT00000009987 /FEA=ENS /TIER=CDS /ANNOT=ens:ENSANGT00000009987 /EVID_CNT=2 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1001 /SEG=chr2L:-32728156,32745100
| Genome Version
| February 2003 (IAGP v.MOZ2)
| Alignments
| chr2L:32728156-32745100 (-) // 100.0 //
| Ensembl
| ENSANGG00000007498
| Trans Membrane
| SNAP_ANOPHELES00000016624 // span:1446-1468 // numtm:1
| Annotation Description
| This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
| Annotation Transcript Cluster
| XM_316540(11)
| Transcript Assignments
| SNAP_ANOPHELES00000016624 // cdna:SNAP chromosome:AgamP3:2L:33295927:33305415:-1 // ensembl_prediction // 11 // --- /// ENSANGT00000009987 // cdna:novel chromosome:AgamP3:2L:33297395:33314338:-1 gene:ENSANGG00000007498 // ensembl_transcript // 11 // --- /
| Annotation Notes
| ENSANGESTT00000003182 // ensembl_est // 3 // Cross Hyb Matching Probes
| | | | | | | | | | | |
ANOXCEL ANNOTATION
| Seq name
| AGAP006513-PA
| First residue
| M
| Description
| pep:novel chromosome:AgamP3:2L:33297395:33314570:-1 gene:AGAP006513 transcript:AGAP006513-RA
| CDS name and link to nucleotide data
| AGAP006513-RA
| Description
| cdna:novel chromosome:AgamP3:2L:33297395:33314570:-1 gene:AGAP006513
| ATG?
| ATG
| Stop?
| *
| Best match to AG-CDS
| AGAP006513-RA
| E value
| 0
| Score
| 3364
| Extent of match
| 1628
| Length of best match
| 4887
| % identity
| 100
| % Match length
| 33
| First residue of match - UTR overhang
| 1
| First residue of sequence
| 1
| Link to whole gene + 2000nt 5' + 200nt 3'
| AGAP006513-PA
| Link to 5' 2,000 nt
| AGAP006513-PA
| Link to 3' 200 nt
| AGAP006513-PA
| Gene name and view at Ensembl
| AGAP006513
| Protein view at Ensembl
| AGAP006513-PA
| Chromosome
| 2L
| For or Rev
| R
| Location
| join(complement(33314450..33314570),complement(33314167..33314340),complement(33313634..33313877),complement(33311099..33311318),complement(33308562..33308697),complement(33304232..33304516),complement(33303435..33304159),complement(33301694..33302559),co
| Exon locations
| 33314450-33314570 33314167-33314340 33313634-33313877 33311099-33311318 33308562-33308697 33304232-33304516 33303435-33304159 33301694-33302559 33301408-33301622 33300940-33301339 33300634-33300881 33300133-33300564 33299867-33300067 33297395-33298014
| Number of introns and link to fasta file
| 13
| intron lengths
| 110 290 2316 2402 4046 73 876 72 69 59 70 66 1853
| Start
| 33297395
| End
| 33314570
| Gene length
| 17175
| Protein size
| 1628
| Complexity index
| 0.16
| Cys number
| 53
| SigP Result
| SIG
| Cleavage Position
| 27-28
| MW
| 183.984
| pI
| 5.78
| Mature MW
| 181.194
| pI
| 5.77
| TMHMM result
| ExpAA=0.57 First60=0.56 PredHel=0 Topology=o
| Predicted helices
| 0
| Best match to NR protein database
| conserved hypothetical protein
| E value
| 0.0
| Match
| gi|108879771
| Score
| 2421
| Extent of match
| 1337
| Length of best match
| 1410
| % identity
| 86
| % Match length
| 95
| First residue of match
| 73
| First residue of sequence
| 27
| Number of segments
| 3
| Species
| Aedes aegypti
| Key words
| CONSERVED HYPOTHETICAL AEDES AEGYPTI DROSOPHILA PSEUDOOBSCURA >GI AXOTACTIN MELANOGASTER SIMILAR TO MELLIFERA TRIBOLIUM CASTANEUM DEAH ASP-GLU-ALA-HIS BOX POLYPEPTIDE 33 STRONGYLOCENTROTUS PURPURATUS ASP GLU-ALA-HIS GLU ALA-HIS ALA HIS PARTIAL NEUREXIN IV CG6827-PB ISOFORM B APIS CONTACTIN ASSOCIATED 4 CRA_B MUS MUSCULUS MKIAA1763 PROTEIN-LIKE UNNAMED PRODUCT CRA_A LIKE CNTP4_MOUSE CONTACTIN-ASSOCIATED PRECURSOR CELL RECOGNITION MOLECULE CASPR4 XENOPUS TROPICALIS MONODELPHIS DOMESTICA CG6827-PA A NRX4_DROME NEUREXIN-4 CANIS FAMILIARIS SAPIENS CASPR2 HOMO Q9UHC6 CNTP2_HUMAN 2 Q9CPW0 CNTP2_MOUSE MKIAA0868
| Best match to SWISSP database
| Contactin-associated protein-like 4 precursor (Cell recognition molecule Caspr4)
| E value
| 1E-072
| Match
| Q99P47|CNTP4_MOUSE
| Score
| 275
| Extent of match
| 1000
| Length of best match
| 1310
| % identity
| 25
| % Match length
| 76
| First residue of match
| 175
| First residue of sequence
| 156
| Number of segments
| 6
| PROSITE motifs
| ASN_GLYCOSYLATION |CAMP_PHOSPHO_SITE |PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |TYR_PHOSPHO_SITE |MYRISTYL |PRENYLATION |MICROBODIES_CTER |
| Best match to GO database
| contactin associated protein-like 4 - Mus musculus - dendrite - protein binding - biological_process
| E value
| E-7
| Function descriptors
| protein binding||binding
| Function parent
| binding
| Function second parent
| protein binding
| GO #
| GO:0005515
| E value of functional GO
| 3e-73
| Component descriptors
| dendrite||neuron projection||cell projection
| Component parent
| cell projection
| Component second parent
| neuron projection
| GO #
| GO:0030425
| E value of component GO
| 3e-73
| Process descriptors
| biological_process
| Process parent
| binding
| Process second parent
| protein binding
| GO #
| GO:0008150
| E value of process GO
| 3e-73
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