| Probeset ID
| Ag.2L.1002.1_CDS_a_at
| Current gene ID
| AGAP006526
| Affymetrix transcript data
| ENSANGT00000010001 /FEA=ENS /TIER=CDS /ANNOT=ENSANGT00000010001 /EVID_CNT=1 /EVID_TYPE=ENS /GENE_CLUSTER=AffxAg.1002 /SEG=chr2L:-33277901,33336196
| | |
| STAGE
| SIGNAL MEAN
| STD DEV
| L
| 425.73
| 38.71
| M
| 406.27
| 29.64
| NBF
| 280.77
| 42.98
| BF3h
| 358.87
| 26.85
| BF24h
| 395.5
| 33.46
| BF48h
| 471.7
| 80.22
| BF72h
| 534.43
| 41.81
| BF96h
| 438.17
| 114.75
| BF15d
| 390.33
| 27.57
| | | | | | | | | | |
|
| TISSUE
| SIGNAL MEAN
| STD DEV
| Fat bodies
| 411.23
| 31.79
| Midgut
| 452.53
| 106.66
| Ovaries
| 449.1
| 17.92
| | | |
|
| 
|
AFFYMETRIX ANNOTATION
| Probeset ID
| Ag.2L.1002.1_CDS_a_at
| Annotation Date
| 3/8/2007
| Target Description
| ens:ENSANGT00000010001 /FEA=ENS /TIER=CDS /ANNOT=ens:ENSANGT00000010001 /EVID_CNT=1 /EVID_TYPE=ENS /GENE_CLUSTER=AffxAg.1002 /SEG=chr2L:-33277901,33336196
| Genome Version
| February 2003 (IAGP v.MOZ2)
| Alignments
| chr2L:33277901-33336196 (-) // 98.08 //
| InterPro
| IPR011511 // Variant SH3 // 0.011
| Annotation Description
| This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
| Annotation Transcript Cluster
| XM_316559(11)
| Transcript Assignments
| ENSANGESTT00000002704 // --- // ensembl_est // 11 // --- /// XM_316560 // Anopheles gambiae str. PEST ENSANGP00000023344 (ENSANGG00000007512), mRNA. // refseq // 11 // --- /// XM_316559 // Anopheles gambiae str. PEST ENSANGP00000010001 (ENSANGG00000007512
| Annotation Notes
| SNAP_ANOPHELES00000004206 // ensembl_prediction // 10 // Negative Strand Matching Probes
| | | | | | | | | | |
ANOXCEL ANNOTATION
| Seq name
| AGAP006526-PA
| First residue
| M
| Description
| pep:novel chromosome:AgamP3:2L:33847140:33905442:-1 gene:AGAP006526 transcript:AGAP006526-RA
| CDS name and link to nucleotide data
| AGAP006526-RA
| Description
| cdna:novel chromosome:AgamP3:2L:33847140:33905442:-1 gene:AGAP006526
| Best match to AG-CDS
| AGAP006526-RA
| E value
| 0
| Score
| 1356
| Extent of match
| 651
| Length of best match
| 2638
| % identity
| 100
| % Match length
| 25
| First residue of match - UTR overhang
| 370
| First residue of sequence
| 1
| Link to whole gene + 2000nt 5' + 200nt 3'
| AGAP006526-PA
| Link to 5' 2,000 nt
| AGAP006526-PA
| Link to 3' 200 nt
| AGAP006526-PA
| Gene name and view at Ensembl
| AGAP006526
| Protein view at Ensembl
| AGAP006526-PA
| Chromosome
| 2L
| For or Rev
| R
| Location
| join(complement(33905005..33905073),complement(33884655..33884749),complement(33860154..33860286),complement(33858570..33858705),complement(33853461..33854564),complement(33850969..33851207),complement(33847453..33847632))
| Exon locations
| 33905005-33905073 33884655-33884749 33860154-33860286 33858570-33858705 33853461-33854564 33850969-33851207 33847453-33847632
| Number of introns and link to fasta file
| 6
| intron lengths
| 20256 24369 1449 4006 2254 3337
| Start
| 33847453
| End
| 33905073
| Gene length
| 57620
| Protein size
| 651
| Complexity index
| 0.52
| Increased AA (fold over average usage)
| Q(3.5)
| Cys number
| 8
| SigP Result
| CYT
| MW
| 71.966
| pI
| 7.74
| TMHMM result
| ExpAA=0.02 First60=0.00 PredHel=0 Topology=o
| Predicted helices
| 0
| Best match to NR protein database
| Lasp CG3849-
| E value
| 1E-141
| Match
| gi|62484462
| Score
| 506
| Extent of match
| 702
| Length of best match
| 657
| % identity
| 45
| % Match length
| 107
| First residue of match
| 1
| First residue of sequence
| 1
| Number of segments
| 1
| Species
| Drosophila melanogaster
| Key words
| CG3849-PB ISOFORM B DROSOPHILA MELANOGASTER >GI LASP1_DROME LIM SH3 DOMAIN CG3849-PA A SIMILAR TO TRIBOLIUM CASTANEUM MELLIFERA PSEUDOOBSCURA CAENORHABDITIS ELEGANS LASP1_CAEEL HYPOTHETICAL BRIGGSAE STRONGYLOCENTROTUS PURPURATUS XENOPUS LAEVIS LASP1 1 LASP-1 MLN CANIS FAMILIARIS LASP TROPICALIS HOMO SAPIENS LASP1_PONPY PONGO PYGMAEUS MONODELPHIS DOMESTICA CRA_A PAN TROGLODYTES HUMAN LASP1_HUMAN CRA_B SYNTHETIC CONSTRUCT 2 MACACA MULATTA TAURUS LASP1_BOVIN ORYCTOLAGUS CUNICULUS LASP1_RABIT KDA PHOSPHOPROTEIN PP40 MLN50 DEF-4 SH3P6
| Best match to SWISSP database
| LIM and SH3 domain protein Lasp - Drosophila melanogaster (Fruit fly)
| E value
| 1E-143
| Match
| Q8I7C3|LASP1_DROME
| Score
| 506
| Extent of match
| 702
| Length of best match
| 657
| % identity
| 45
| % Match length
| 107
| First residue of match
| 1
| First residue of sequence
| 1
| Number of segments
| 1
| PROSITE motifs
| ASN_GLYCOSYLATION |PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |MYRISTYL |PRENYLATION |MICROBODIES_CTER |ATP_GTP_A |LIM_DOMAIN_1 |
| Non promiscuous prosite motifs
| ATP_GTP_A |LIM_DOMAIN_1 |
| Best match to GO database
| Lasp - Drosophila melanogaster - actin cytoskeleton
| E value
|
| Function descriptors
| molecular_function
| Function parent
| molecular_function
| GO #
| GO:0003674
| E value of functional GO
| 2e-48
| Component descriptors
| cellular_component
| Component parent
| cellular_component
| GO #
| GO:0005575
| E value of component GO
| 2e-48
| Process descriptors
| biological_process
| Process parent
| molecular_function
| GO #
| GO:0008150
| E value of process GO
| 2e-48
| Best match to KOG database
| Nebulin repeat protein
| E value
| 4E-041
| General class
| Cytoskeleton
| Best match to PFAM database
| SH3_1
| E value
| 1E-012
| Best match to SMART database
| SH3
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