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Probeset ID Ag.2L.1007.0_CDS_at
Current gene ID AGAP006678 (AGAP006678 is also associated with: Ag.2L.1251.0_CDS_at - Ag.2L.1252.0_CDS_at Ag.2L.3981.0_at)
Affymetrix transcript data ENSANGT00000021018 /FEA=ENS /TIER=CDS /ANNOT=ENSANGT00000021018 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1007 /SEG=chr2L:-36090134,36091131


STAGE SIGNAL MEAN STD DEV
L 555 98.14
M 436.5 16.41
NBF 554.73 87.1
BF3h 568.5 10.24
BF24h 724.27 20.54
BF48h 1089.27 60.89
BF72h 1254.8 109.46
BF96h 806.53 111.66
BF15d 865.9 24.6
TISSUE SIGNAL MEAN STD DEV
Fat bodies 791.07 213.13
Midgut 442.63 42.86
Ovaries 511.97 99.26


ENSEMBL ANNOTATION
VECTORBASE ANNOTATION
USER-CONTRIBUTED NOTES (0)

AFFYMETRIX ANNOTATION
Probeset ID Ag.2L.1007.0_CDS_at
Annotation Date 3/8/2007
Target Description ens:ENSANGT00000021018 /FEA=ENS /TIER=CDS /ANNOT=ens:ENSANGT00000021018 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1007 /SEG=chr2L:-36090134,36091131
Genome Version February 2003 (IAGP v.MOZ2)
Alignments chr2L:36090134-36091131 (-) // 92.79 //
Ensembl ENSANGG00000018529
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
Annotation Transcript Cluster XM_316715(11)
Transcript Assignments ENSANGESTT00000012557 // --- // ensembl_est // 11 // --- /// SNAP_ANOPHELES00000012110 // cdna:SNAP chromosome:AgamP3:2L:36659585:36664749:-1 // ensembl_prediction // 10 // --- /// ENSANGT00000021018 // cdna:novel chromosome:AgamP3:2L:36659371:36660369:-1

ANOXCEL ANNOTATION
Seq name AGAP006678-PA
First residue M
Description pep:novel chromosome:AgamP3:2L:36659371:36664972:-1 gene:AGAP006678 transcript:AGAP006678-RA
CDS name and link to nucleotide data AGAP006678-RA
Description cdna:novel chromosome:AgamP3:2L:36659371:36664972:-1 gene:AGAP006678
Best match to AG-CDS AGAP006678-RA
E value 0
Score 3012
Extent of match 1500
Length of best match 4940
% identity 100
% Match length 30
First residue of match - UTR overhang 224
First residue of sequence 1
Link to whole gene + 2000nt 5' + 200nt 3' AGAP006678-PA
Link to 5' 2,000 nt AGAP006678-PA
Link to 3' 200 nt AGAP006678-PA
Gene name and view at Ensembl AGAP006678
Protein view at Ensembl AGAP006678-PA
Chromosome 2L
For or Rev R
Location join(complement(36664565..36664749),complement(36664367..36664484),complement(36664064..36664274),complement(36663944..36663989),complement(36663777..36663867),complement(36663536..36663697),complement(36663292..36663445),complement(36660148..36663188),co
Exon locations 36664565-36664749 36664367-36664484 36664064-36664274 36663944-36663989 36663777-36663867 36663536-36663697 36663292-36663445 36660148-36663188 36659585-36660079
Number of introns and link to fasta file 8
intron lengths 81 93 75 77 80 91 104 69
Start 36659585
End 36664749
Gene length 5164
Protein size 1500
Complexity index 0.48
Cys number 8
SigP Result CYT
MW 154.216
pI 9.47
TMHMM result ExpAA=0.09 First60=0.00 PredHel=0 Topology=o
Predicted helices 0
Best match to NR protein database cyclin t
E value 0.0
Match gi|108879520
Score 1042
Extent of match 1385
Length of best match 1210
% identity 49
% Match length 114
First residue of match 16
First residue of sequence 2
Number of segments 2
Species Aedes aegypti
Key words CYCLIN T AEDES AEGYPTI DROSOPHILA PSEUDOOBSCURA >GI CG6292-PB ISOFORM B MELANOGASTER CCNT_DROME CYCLIN-T POSITIVE ELONGATION TRANSCRIPTION FACTOR SUBUNIT SIMILAR TO 1 APIS MELLIFERA DANIO RERIO HYPOTHETICAL XENOPUS LAEVIS T2 CANIS FAMILIARIS A 6 UNNAMED PRODUCT TETRAODON NIGROVIRIDIS T1 CAPRA HIRCUS RATTUS NORVEGICUS CCNT1_HORSE CYCLIN-T1 CYCT1 EQUUS CABALLUS 3 PAN TROGLODYTES 2 T2B HOMO SAPIENS CRA_B CCNT2_HUMAN CYCLIN-T2 CYCT2 UNKNOWN CRA_A MACACA MULATTA
Best match to SWISSP database Cyclin-T - Drosophila melanogaster (Fruit fly)
E value 1E-131
Match O96433|CCNT_DROME
Score 471
Extent of match 1347
Length of best match 1097
% identity 32
% Match length 123
First residue of match 20
First residue of sequence 2
Number of segments 7
PROSITE motifs ASN_GLYCOSYLATION |PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |TYR_PHOSPHO_SITE |MYRISTYL |AMIDATION |PRENYLATION |MICROBODIES_CTER |
Best match to GO database Cyclin T - Drosophila melanogaster - cyclin-dependent protein kinase regulator activity - transcriptional elongation regulator activity - transcription elongation factor complex b - actin filament organization - cell cycle - regulation of cell shape - response to heat - transcription - RNA polymerase subunit kinase activity - positive transcription elongation factor activity - nucleus - polytene chromosome - polytene chromosome puff
E value
Function descriptors cyclin-dependent protein kinase regulator activity||protein kinase regulator activity||kinase regulator activity||enzyme regulator activity
Function parent enzyme regulator activity
Function second parent kinase regulator activity
GO # GO:0016538
E value of functional GO 1e-132
Component descriptors transcription elongation factor complex b||transcription elongation factor complex||nuclear outer membrane||transverse filament||nuclear chromosome part||microsporocyte nucleus||nucleus||intracellular membrane-bound organelle||intracellular organelle||prospore||immature spore
Component parent immature spore
Component second parent prospore
GO # GO:0008024
E value of component GO 1e-132
Process descriptors actin filament organization||actin cytoskeleton organization and biogenesis||actin filament-based process||cytoskeleton organization and biogenesis||organelle organization and biogenesis||cell organization and biogenesis||cellular physiological process
Process parent enzyme regulator activity
Process second parent kinase regulator activity
GO # GO:0007015
E value of process GO 1e-132
Best match to KOG database CDK9 kinase-activating protein cyclin T
E value 1E-077
General class Cell cycle control, cell division, chromosome partitioning
Best match to PFAM database Cyclin_N
E value 4E-014
Best match to SMART database CYCLIN
E value 5E-016
Best match to AEGY-PEP database cyclin t
E value 0
Match AAEL004839-RA
Score 1042
Extent of match 1385
Length of best match 1210
% identity 49
% Match length 114
First residue of match 16
First residue of sequence 2
Number of segments 3
Best match to DMPROT database CycT-PB
E value 1E-132
Match CycT-PB
Score 471
Extent of match 1347
Length of best match 1097
% identity 32
% Match length 123
First residue of match 20
First residue of sequence 2
Number of segments 7
Best match to CELEG database Partially_confirmed TR:Q8IFX6 protein_id:AAC70890.1 Length = 2232 Score = 134
E value 3E-031
Match K06A9.1b
Score 134
Extent of match 1350
Length of best match 2232
% identity 21
% Match length 60
First residue of match 225
First residue of sequence 249
Number of segments 11
Best match to ARAB database cyclin family prote
E value 5E-035
Match AT5G45190.1
Score 147
Extent of match 426
Length of best match 579
% identity 27
% Match length 74
First residue of match 18
First residue of sequence 5
Number of segments 2
Best match to YEAST database SW:Q8TGE1 Q8tge1 saccharomyces cerevisiae (baker's yeast). cell wall protein
E value 8E-025
Match NR_SC:SW-Q8TGE1
Score 112
Extent of match 687
Length of best match 1713
% identity 25
% Match length 40
First residue of match 22
First residue of sequence 249
Number of segments 10
Best match to clusterized An. gambiae ESTs from different libraries all-ests-contig_8527
E value 1e-133
Score 473
Extent of match 239
Length of best match 946
% identity 98
% Match length 25
First residue of match 13
First residue of sequence 1263
Number of segments 1
Orientation of output FOR
Satisfied 95% id on length 100 Y
Number of sequences on assembled contig 5
ESTs coming from from all-instars library 0
Blood-abdomen library 0
Sugar-abd library 0
Infected blood-abd library 0
Big blood fed library 3
Big non blood fed library 0
Head library 2
Immune cells 0
normalized-fatbody 0
Female salivary glands (Ribeiro and Pasteur) 0
Male salivary glands 0
Best match to Affymetrix chip Ag.2L.1007.0_CDS_at
E value 1E-133
Extent of match 238
% identity 98
Clustered at 35%-Sim- on 60% of length - - Cluster# 4361
# seqs 1
Clustered at 45%-Sim- on 60% of length - - Cluster# 4926
# seqs 1
Clustered at 55%-Sim- on 60% of length - - Cluster# 5279
# seqs 1
Clustered at 65%-Sim- on 60% of length - - Cluster# 5542
# seqs 1
Clustered at 75%-Sim- on 6% of length - - Cluster# 5689
# seqs 1
Clustered at 85%-Sim- on 60% of length - - Cluster# 5778
# seqs 1
Clustered at 95%-Sim- on 60% of length - - Cluster# 5835
# seqs 1



User Contributed Notes
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Ag.2L.1007.0_CDS_at


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