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Probeset ID Ag.2L.1009.0_CDS_at
Current gene ID AGAP006730
Affymetrix transcript data ENSANGT00000021614 /FEA=ENS /TIER=CDS /ANNOT=ENSANGT00000021614 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1009 /SEG=chr2L:-36733763,36736947


STAGE SIGNAL MEAN STD DEV
L 318.97 38.12
M 429.33 107.69
NBF 318.53 66.94
BF3h 310.67 39.8
BF24h 959.4 24.65
BF48h 510.73 36.7
BF72h 586.27 84.37
BF96h 437.33 106.12
BF15d 581.53 44.25
TISSUE SIGNAL MEAN STD DEV
Fat bodies 583.8 294.01
Midgut 398.73 59.21
Ovaries 839.23 121.86


ENSEMBL ANNOTATION
VECTORBASE ANNOTATION
USER-CONTRIBUTED NOTES (0)

AFFYMETRIX ANNOTATION
Probeset ID Ag.2L.1009.0_CDS_at
Annotation Date 3/8/2007
Target Description ens:ENSANGT00000021614 /FEA=ENS /TIER=CDS /ANNOT=ens:ENSANGT00000021614 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1009 /SEG=chr2L:-36733763,36736947
Genome Version February 2003 (IAGP v.MOZ2)
Alignments chr2L:36733763-36736947 (-) // 100.0 //
Ensembl ENSANGG00000019125
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
Annotation Transcript Cluster XM_309015(11)
Transcript Assignments SNAP_ANOPHELES00000004111 // cdna:SNAP chromosome:AgamP3:2L:37303003:37305734:-1 // ensembl_prediction // 11 // --- /// ENSANGT00000021614 // cdna:novel chromosome:AgamP3:2L:37303003:37305935:-1 gene:ENSANGG00000019125 // ensembl_transcript // 11 // --- /

ANOXCEL ANNOTATION
Seq name AGAP006730-PA
First residue M
Description pep:novel chromosome:AgamP3:2L:37303003:37305935:-1 gene:AGAP006730 transcript:AGAP006730-RA
CDS name and link to nucleotide data AGAP006730-RA
Description cdna:novel chromosome:AgamP3:2L:37303003:37305935:-1 gene:AGAP006730
Stop? *
Best match to AG-CDS AGAP006730-RA
E value 0
Score 1446
Extent of match 721
Length of best match 2367
% identity 100
% Match length 30
First residue of match - UTR overhang 202
First residue of sequence 1
Link to whole gene + 2000nt 5' + 200nt 3' AGAP006730-PA
Link to 5' 2,000 nt AGAP006730-PA
Link to 3' 200 nt AGAP006730-PA
Gene name and view at Ensembl AGAP006730
Protein view at Ensembl AGAP006730-PA
Chromosome 2L
For or Rev R
Location join(complement(37305497..37305734),complement(37305163..37305411),complement(37305005..37305108),complement(37304753..37304905),complement(37304281..37304647),complement(37303464..37304202),complement(37303250..37303389),complement(37303003..37303178))
Exon locations 37305497-37305734 37305163-37305411 37305005-37305108 37304753-37304905 37304281-37304647 37303464-37304202 37303250-37303389 37303003-37303178
Number of introns and link to fasta file 7
intron lengths 86 55 100 106 79 75 72
Start 37303003
End 37305734
Gene length 2731
Protein size 721
Complexity index 0.21
Cys number 26
SigP Result CYT
MW 77.913
pI 7.9
TMHMM result ExpAA=0.00 First60=0.00 PredHel=0 Topology=o
Predicted helices 0
Best match to NR protein database conserved hypothetical protein
E value 1E-158
Match gi|108879220
Score 561
Extent of match 769
Length of best match 696
% identity 46
% Match length 110
First residue of match 1
First residue of sequence 1
Number of segments 1
Species Aedes aegypti
Key words CONSERVED HYPOTHETICAL AEDES AEGYPTI DROSOPHILA PSEUDOOBSCURA >GI MELANOGASTER AAEL_AAEL015303 SIMILAR TO RING FINGER 34 ISOFORM 2 1 APIS MELLIFERA CRA_G HOMO SAPIENS MONODELPHIS DOMESTICA RIFIFYLIN TRIBOLIUM CASTANEUM XENOPUS LAEVIS 6 PAN TROGLODYTES 3 CRA_C DANIO RERIO FYVE-RING SAKURA CRA_A FYVE UNNAMED PRODUCT MACACA FASCICULARIS MULATTA TETRAODON NIGROVIRIDIS 5 CANIS FAMILIARIS 4 GALLUS FRING MUS MUSCULUS NOVEL LIKE DOMAIN CONTAINING CRA_B
Best match to SWISSP database E3 ubiquitin-protein ligase rififylin (EC 6.3.2.-) (RING finger and FYVE-like
E value 1E-031
Match Q8CIN9|RFFL_RAT
Score 137
Extent of match 149
Length of best match 362
% identity 47
% Match length 41
First residue of match 47
First residue of sequence 3
Number of segments 2
PROSITE motifs ASN_GLYCOSYLATION |CAMP_PHOSPHO_SITE |PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |TYR_PHOSPHO_SITE |MYRISTYL |AMIDATION |PRENYLATION |MICROBODIES_CTER |
Best match to GO database DSPP: Dentin sialophosphoprotein precursor [Contains: Dentin phosphoprotein - Homo sapiens - extracellular matrix structural constituent - calcium ion binding - collagen binding - ossification - multicellular organismal development - proteinaceous extracellular matrix
E value .00000000
Function descriptors extracellular matrix structural constituent||structural molecule activity
Function parent structural molecule activity
Function second parent extracellular matrix structural constituent
GO # GO:0005201
E value of functional GO 1e-09
Component descriptors extracellular matrix (sensu Metazoa)||tectum||extracellular matrix part
Component parent extracellular matrix part
Component second parent tectum
GO # GO:0005578
E value of component GO 1e-09
Process descriptors Process parent structural molecule activity
Process second parent extracellular matrix structural constituent
GO # GO:0001503
E value of process GO 1e-09
Best match to KOG database Predicted E3 ubiquitin ligase
E value 6E-034
General class Posttranslational modification, protein turnover, chaperones
Best match to PFAM database FYVE
E value 0.001
Best match to SMART database FYVE
E value 8E-006
Best match to AEGY-PEP database conserved hypothetical protein
E value 1e-160
Match AAEL005126-RA
Score 561
Extent of match 769
Length of best match 696
% identity 46
% Match length 110
First residue of match 1
First residue of sequence 1
Number of segments 1
Best match to DMPROT database CG17019-PA
E value 1E-104
Match CG17019-PA
Score 377
Extent of match 755
Length of best match 700
% identity 34
% Match length 108
First residue of match 1
First residue of sequence 1
Number of segments 1
Best match to CELEG database Partially_confirmed TR:Q8IFX6 protein_id:AAC70890.1 Length = 2232 Score = 68.9
E value 8E-012
Match K06A9.1b
Score 68.9
Extent of match 440
Length of best match 2232
% identity 23
% Match length 20
First residue of match 206
First residue of sequence 69
Number of segments 13
Best match to ARAB database expressed prote
E value 5E-008
Match AT1G59560.1
Score 56.6
Extent of match 49
Length of best match 338
% identity 42
% Match length 14
First residue of match 289
First residue of sequence 672
Number of segments 1
Best match to YEAST database gi|295671|gb|AAA35091.1 (L11275) selected as a weak suppressor of a mutant of
E value 3E-010
Match NR_SC:GP-AAA35091_1
Score 62.4
Extent of match 270
Length of best match 406
% identity 19
% Match length 67
First residue of match 4
First residue of sequence 55
Number of segments 9
Best match to clusterized An. gambiae ESTs from different libraries all-ests-contig_11580
E value 8e-73
Score 271
Extent of match 130
Length of best match 868
% identity 99
% Match length 15
First residue of match 478
First residue of sequence 1
Number of segments 1
Orientation of output FOR
Satisfied 95% id on length 100 Y
Number of sequences on assembled contig 3
ESTs coming from from all-instars library 0
Blood-abdomen library 0
Sugar-abd library 0
Infected blood-abd library 0
Big blood fed library 1
Big non blood fed library 2
Head library 0
Immune cells 0
normalized-fatbody 0
Female salivary glands (Ribeiro and Pasteur) 0
Male salivary glands 0
Best match to Affymetrix chip Ag.2L.1009.0_CDS_at
E value 0
Extent of match 724
% identity 93
Clustered at 35%-Sim- on 60% of length - - Cluster# 4341
# seqs 1
Clustered at 45%-Sim- on 60% of length - - Cluster# 4904
# seqs 1
Clustered at 55%-Sim- on 60% of length - - Cluster# 5253
# seqs 1
Clustered at 65%-Sim- on 60% of length - - Cluster# 5512
# seqs 1
Clustered at 75%-Sim- on 6% of length - - Cluster# 5658
# seqs 1
Clustered at 85%-Sim- on 60% of length - - Cluster# 5747
# seqs 1
Clustered at 95%-Sim- on 60% of length - - Cluster# 5803
# seqs 1



User Contributed Notes
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Ag.2L.1009.0_CDS_at


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