| Probeset ID
| Ag.2L.1010.0_CDS_at
| Current gene ID
| AGAP006750
| Affymetrix transcript data
| ENSANGT00000020302 /FEA=ENS /TIER=CDS /ANNOT=ENSANGT00000020302 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1010 /SEG=chr2L:-37184086,37185793
| | |
| STAGE
| SIGNAL MEAN
| STD DEV
| L
| 492.43
| 60.63
| M
| 417.7
| 177.92
| NBF
| 474.1
| 21.78
| BF3h
| 360.7
| 15.34
| BF24h
| 606.87
| 49.4
| BF48h
| 567.17
| 40.35
| BF72h
| 674.57
| 26.3
| BF96h
| 671.97
| 73.37
| BF15d
| 938.93
| 36.17
| | | | | | | | | | |
|
| TISSUE
| SIGNAL MEAN
| STD DEV
| Fat bodies
| 385.83
| 76.34
| Midgut
| 750.73
| 152.13
| Ovaries
| 312.5
| 53.02
| | | |
|
| 
|
AFFYMETRIX ANNOTATION
| Probeset ID
| Ag.2L.1010.0_CDS_at
| Annotation Date
| 3/8/2007
| Target Description
| ens:ENSANGT00000020302 /FEA=ENS /TIER=CDS /ANNOT=ens:ENSANGT00000020302 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1010 /SEG=chr2L:-37184086,37185793
| Genome Version
| February 2003 (IAGP v.MOZ2)
| Alignments
| chr2L:37184086-37185793 (-) // 89.36 //
| Ensembl
| ENSANGG00000017813
| Annotation Description
| This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
| Annotation Transcript Cluster
| XM_308991(11)
| Transcript Assignments
| ENSANGESTT00000011031 // --- // ensembl_est // 11 // --- /// ENSANGT00000020302 // cdna:novel chromosome:AgamP3:2L:37753326:37754127:-1 gene:ENSANGG00000017813 // ensembl_transcript // 11 // --- /// XM_308991 // Anopheles gambiae str. PEST ENSANGP00000020
| Annotation Notes
| SNAP_ANOPHELES00000000340 // ensembl_prediction // 7 // Cross Hyb Matching Probes
| | | | | | | | | | |
ANOXCEL ANNOTATION
| Seq name
| AGAP006750-PA
| First residue
| M
| Description
| pep:novel chromosome:AgamP3:2L:37752410:37754544:-1 gene:AGAP006750 transcript:AGAP006750-RA
| CDS name and link to nucleotide data
| AGAP006750-RA
| Description
| cdna:novel chromosome:AgamP3:2L:37752410:37754544:-1 gene:AGAP006750
| ATG?
| ATG
| Stop?
| *
| Best match to AG-CDS
| AGAP006750-RA
| E value
| 0
| Score
| 1239
| Extent of match
| 621
| Length of best match
| 1866
| % identity
| 100
| % Match length
| 33
| First residue of match - UTR overhang
| 1
| First residue of sequence
| 1
| Link to whole gene + 2000nt 5' + 200nt 3'
| AGAP006750-PA
| Link to 5' 2,000 nt
| AGAP006750-PA
| Link to 3' 200 nt
| AGAP006750-PA
| Gene name and view at Ensembl
| AGAP006750
| Protein view at Ensembl
| AGAP006750-PA
| Chromosome
| 2L
| For or Rev
| R
| Location
| join(complement(37753918..37754544),complement(37753703..37753825),complement(37753485..37753620),complement(37752410..37753389))
| Exon locations
| 37753918-37754544 37753703-37753825 37753485-37753620 37752410-37753389
| Number of introns and link to fasta file
| 3
| intron lengths
| 93 83 96
| Start
| 37752410
| End
| 37754544
| Gene length
| 2134
| Protein size
| 621
| Complexity index
| 0.19
| Cys number
| 13
| SigP Result
| CYT
| MW
| 68.13
| pI
| 4.95
| TMHMM result
| ExpAA=0.33 First60=0.23 PredHel=0 Topology=o
| Predicted helices
| 0
| Best match to NR protein database
| conserved hypothetical protein
| E value
| 1E-111
| Match
| gi|108876436
| Score
| 407
| Extent of match
| 323
| Length of best match
| 370
| % identity
| 64
| % Match length
| 87
| First residue of match
| 7
| First residue of sequence
| 61
| Number of segments
| 1
| Species
| Aedes aegypti
| Key words
| CONSERVED HYPOTHETICAL AEDES AEGYPTI SIMILAR TO SERINE THREONINE-PROTEIN PHOSPHATASE 4 REGULATORY SUBUNIT 1-LIKE APIS MELLIFERA THREONINE 1 LIKE XENOPUS TROPICALIS >GI TRIBOLIUM CASTANEUM LAEVIS PPP4R1-PROV PPP4R1 PP4RMEG MONODELPHIS DOMESTICA GALLUS RATTUS NORVEGICUS PP4R1_RAT 4-ASSOCIATED ASSOCIATED ISOFORM CRA_A MUS MUSCULUS CRA_C HOMO SAPIENS 9 PAN TROGLODYTES 10 11 3 7 MACACA MULATTA 2 19.5 KDA B CRA_B A PP4R1_HUMAN
| Best match to SWISSP database
| Serine/threonine-protein phosphatase 4 regulatory subunit 1 - Rattus norvegicus
| E value
| 9E-031
| Match
| Q8VI02|PP4R1_RAT
| Score
| 134
| Extent of match
| 310
| Length of best match
| 951
| % identity
| 29
| % Match length
| 33
| First residue of match
| 622
| First residue of sequence
| 28
| Number of segments
| 1
| PROSITE motifs
| ASN_GLYCOSYLATION |CAMP_PHOSPHO_SITE |PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |MYRISTYL |AMIDATION |PRENYLATION |MICROBODIES_CTER |
| Best match to GO database
| Nucleolar, serine-rich protein with a role in preribosome assembly or transport - Saccharomyces cerevisiae - molecular_function - nucleolus - nucleocytoplasmic transport - ribosome biogenesis and assembly
| E value
| .0000000000
| Function descriptors
| molecular_function
| Function parent
| molecular_function
| GO #
| GO:0003674
| E value of functional GO
| 3e-11
| Component descriptors
| nucleolus||microsporocyte nucleus||nucleus||intracellular membrane-bound organelle||intracellular organelle||prospore||immature spore
| Component parent
| immature spore
| Component second parent
| prospore
| GO #
| GO:0005730
| E value of component GO
| 3e-11
| Process descriptors
| nucleocytoplasmic transport||intracellular transport||ER localization||cellular localization||cell organization and biogenesis||cellular physiological process
| Process parent
| molecular_function
| GO #
| GO:0006913
| E value of process GO
| 3e-11
| Best match to KOG database
| Protein phosphatase 2A regulatory subunit A and related proteins
| E value
| 1E-010
| General class
| Signal transduction mechanisms
| Best match to PFAM database
| AF-4
| E value
| 0.004
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