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Probeset ID Ag.2L.1015.0_CDS_s_at
Current gene ID AGAP007284
Affymetrix transcript data ENSANGT00000016616 /FEA=ENS /TIER=CDS /ANNOT=ENSANGT00000016616 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1015 /SEG=chr2L:-44432715,44438269


STAGE SIGNAL MEAN STD DEV
L 869.93 43.88
M 819.83 70.5
NBF 592.7 106
BF3h 555.27 107.73
BF24h 356.1 43.51
BF48h 163.8 25.37
BF72h 119.3 16.76
BF96h 152.53 28.49
BF15d 397.83 113.62
TISSUE SIGNAL MEAN STD DEV
Fat bodies 70.8 83.95
Midgut 4252.57 412.25
Ovaries 15.9 12.22


ENSEMBL ANNOTATION
VECTORBASE ANNOTATION
USER-CONTRIBUTED NOTES (0)

AFFYMETRIX ANNOTATION
Probeset ID Ag.2L.1015.0_CDS_s_at
Annotation Date 3/8/2007
Target Description ens:ENSANGT00000016616 /FEA=ENS /TIER=CDS /ANNOT=ens:ENSANGT00000016616 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1015 /SEG=chr2L:-44432715,44438269
Genome Version February 2003 (IAGP v.MOZ2)
Alignments chr2L:44432715-44438269 (-) // 100.0 //
Ensembl ENSANGG00000013475
InterPro IPR005032 // Stromal antigen (SA/STAG) protein // 9.6E-77 /// IPR005032 // Stromal antigen (SA/STAG) protein // 2.7E-35
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
Annotation Transcript Cluster XM_308536(11)
Transcript Assignments ENSANGESTT00000008489 // --- // ensembl_est // 11 // --- /// SNAP_ANOPHELES00000004991 // cdna:SNAP chromosome:AgamP3:UNKN:22695393:22697277:1 // ensembl_prediction // 11 // --- /// SNAP_ANOPHELES00000011381 // cdna:SNAP chromosome:AgamP3:2L:45001949:4500

ANOXCEL ANNOTATION
Seq name AGAP007284-PA
First residue M
Description pep:novel chromosome:AgamP3:2L:45001822:45007428:-1 gene:AGAP007284 transcript:AGAP007284-RA
CDS name and link to nucleotide data AGAP007284-RA
Description cdna:novel chromosome:AgamP3:2L:45001822:45007428:-1 gene:AGAP007284
ATG? ATG
Best match to AG-CDS AGAP007284-RA
E value 0
Score 954
Extent of match 461
Length of best match 1513
% identity 100
% Match length 30
First residue of match - UTR overhang 1
First residue of sequence 1
Link to whole gene + 2000nt 5' + 200nt 3' AGAP007284-PA
Link to 5' 2,000 nt AGAP007284-PA
Link to 3' 200 nt AGAP007284-PA
Gene name and view at Ensembl AGAP007284
Protein view at Ensembl AGAP007284-PA
Chromosome 2L
For or Rev R
Location join(complement(45006426..45007428),complement(45002241..45002404),complement(45001949..45002167))
Exon locations 45006426-45007428 45002241-45002404 45001949-45002167
Number of introns and link to fasta file 2
intron lengths 4022 74
Start 45001949
End 45007428
Gene length 5479
Protein size 461
Complexity index 0.19
Cys number 7
SigP Result SIG
Cleavage Position 20-21
MW 52.218
pI 6.13
Mature MW 50.156
pI 6.04
TMHMM result ExpAA=17.94 First60=17.90 PredHel=1 Topology=i7-29o
Predicted helices 1
% membrane 4.8
% outside 93.7
% inside 1.5
Best match to NR protein database conserved hypothetical protein
E value 1E-155
Match gi|108873114
Score 552
Extent of match 361
Length of best match 381
% identity 66
% Match length 95
First residue of match 20
First residue of sequence 29
Number of segments 1
Species Aedes aegypti
Key words CONSERVED HYPOTHETICAL AEDES AEGYPTI CG5895-PA DROSOPHILA MELANOGASTER >GI PSEUDOOBSCURA SIMILAR TO ISOFORM A APIS MELLIFERA TRIBOLIUM CASTANEUM DDBDRAFT_0189320 DICTYOSTELIUM DISCOIDEUM AX4 PHOSPHATIDYLINOSITOL-SPECIFIC PHOSPHOLIPASE C X DOMAIN CONTAINING 1 RATTUS NORVEGICUS PHOSPHATIDYLINOSITOL SPECIFIC CRA_B MUS MUSCULUS CHAETOMIUM GLOBOSUM CBS UNNAMED PRODUCT 2 DANIO RERIO MACACA MULATTA CANIS FAMILIARIS HOMO SAPIENS PLCXD1 PSEEN5360 PSEUDOMONAS ENTOMOPHILA L48 CRA_A
Best match to SWISSP database 1-phosphatidylinositol phosphodiesterase precursor (EC 4.6.1.13)
E value 1.9
Match P34024|PLC_LISMO
Score 33.5
Extent of match 95
Length of best match 317
% identity 28
% Match length 30
First residue of match 14
First residue of sequence 125
Number of segments 1
PROSITE motifs ASN_GLYCOSYLATION |CAMP_PHOSPHO_SITE |PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |MYRISTYL |AMIDATION |PRENYLATION |MICROBODIES_CTER |LEUCINE_ZIPPER |
Non promiscuous prosite motifs LEUCINE_ZIPPER |
Best match to GO database
E value
Function descriptors
Component descriptors
Process descriptors
Best match to KOG database Glycosylphosphatidylinositol-specific phospholipase C
E value 2E-023
General class Signal transduction mechanisms
Best match to AEGY-PEP database conserved hypothetical protein
E value 1e-157
Match AAEL010678-RA
Score 552
Extent of match 361
Length of best match 381
% identity 66
% Match length 95
First residue of match 20
First residue of sequence 29
Number of segments 1
Best match to DMPROT database CG5895-PA
E value 2E-082
Match CG5895-PA
Score 302
Extent of match 436
Length of best match 453
% identity 37
% Match length 96
First residue of match 25
First residue of sequence 32
Number of segments 1
Best match to CELEG database cdh-4 Approximately 25 cadherin-repea
E value 1.5
Match F25F2.2
Score 30.8
Extent of match 33
Length of best match 4307
% identity 42
% Match length 1
First residue of match 214
First residue of sequence 120
Number of segments 1
Best match to ARAB database 1-phosphatidylinositol phosphodiesterase-relat
E value 0.48
Match AT4G38690.1
Score 32.7
Extent of match 136
Length of best match 318
% identity 23
% Match length 43
First residue of match 46
First residue of sequence 152
Number of segments 1
Best match to YEAST database SW:YG12_YEAST P53201 saccharomyces cerevisiae (baker's yeast). hypothetical 55.2
E value 0.51
Match NR_SC:SW-YG12_YEAST
Score 31.2
Extent of match 106
Length of best match 476
% identity 23
% Match length 22
First residue of match 251
First residue of sequence 251
Number of segments 1
Best match to clusterized An. gambiae ESTs from different libraries all-ests-contig_7364
E value 1e-131
Score 465
Extent of match 221
Length of best match 794
% identity 99
% Match length 28
First residue of match 132
First residue of sequence 1
Number of segments 1
Orientation of output FOR
Satisfied 95% id on length 100 Y
Number of sequences on assembled contig 6
ESTs coming from from all-instars library 3
Blood-abdomen library 0
Sugar-abd library 0
Infected blood-abd library 0
Big blood fed library 1
Big non blood fed library 2
Head library 0
Immune cells 0
normalized-fatbody 0
Female salivary glands (Ribeiro and Pasteur) 0
Male salivary glands 0
Best match to Affymetrix chip Ag.2L.1015.0_CDS_s_at
E value 0
Extent of match 460
% identity 96
Clustered at 35%-Sim- on 60% of length - - Cluster# 4599
# seqs 1
Clustered at 45%-Sim- on 60% of length - - Cluster# 5211
# seqs 1
Clustered at 55%-Sim- on 60% of length - - Cluster# 5603
# seqs 1
Clustered at 65%-Sim- on 60% of length - - Cluster# 5915
# seqs 1
Clustered at 75%-Sim- on 6% of length - - Cluster# 6075
# seqs 1
Clustered at 85%-Sim- on 60% of length - - Cluster# 6196
# seqs 1
Clustered at 95%-Sim- on 60% of length - - Cluster# 6298
# seqs 1



User Contributed Notes
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Ag.2L.1015.0_CDS_s_at


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