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Probeset ID Ag.2L.1016.0_UTR_at
Current gene ID AGAP007293 (AGAP007293 is also associated with: Ag.2L.1016.0_CDS_at)
Affymetrix transcript data ENSANGT00000028546 /FEA=ENS /TIER=UTR /ANNOT=ENSANGT00000028546 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1016 /SEG=chr2L:-44458341,44466537


STAGE SIGNAL MEAN STD DEV
L 48.67 25.37
M 124.8 45.92
NBF 105.93 17.53
BF3h 77.87 22.14
BF24h 46.03 31.05
BF48h 55.4 36.38
BF72h 18.27 5.09
BF96h 47.37 20.59
BF15d 63.23 2.45
TISSUE SIGNAL MEAN STD DEV
Fat bodies 62.4 34.37
Midgut 12.37 8.33
Ovaries 78.1 17.76


ENSEMBL ANNOTATION
VECTORBASE ANNOTATION
USER-CONTRIBUTED NOTES (0)

AFFYMETRIX ANNOTATION
Probeset ID Ag.2L.1016.0_UTR_at
Annotation Date 3/8/2007
Target Description ens:ENSANGT00000028546 /FEA=ENS /TIER=UTR /ANNOT=ens:ENSANGT00000028546 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1016 /SEG=chr2L:-44458341,44466537
Genome Version February 2003 (IAGP v.MOZ2)
Alignments chr2L:44458341-44460449 (-) // 78.87 //
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 1 transcripts. // false // Design Representative Id // R
Annotation Transcript Cluster Ag.2L.1016.0_UTR
Transcript Assignments Ag.2L.1016.0_UTR // --- // gb // --- // ---
Annotation Notes ENSANGESTT00000008482 // ensembl_est // 1 // Cross Hyb Matching Probes

ANOXCEL ANNOTATION
Seq name AGAP007293-PA
First residue M
Description pep:novel chromosome:AgamP3:2L:45028132:45034380:-1 gene:AGAP007293 transcript:AGAP007293-RA
CDS name and link to nucleotide data AGAP007293-RA
Description cdna:novel chromosome:AgamP3:2L:45028132:45034380:-1 gene:AGAP007293
Best match to AG-CDS AGAP007293-RA
E value 0
Score 730
Extent of match 341
Length of best match 1996
% identity 100
% Match length 17
First residue of match - UTR overhang 388
First residue of sequence 1
Link to whole gene + 2000nt 5' + 200nt 3' AGAP007293-PA
Link to 5' 2,000 nt AGAP007293-PA
Link to 3' 200 nt AGAP007293-PA
Gene name and view at Ensembl AGAP007293
Protein view at Ensembl AGAP007293-PA
Chromosome 2L
For or Rev R
Location complement(45028787..45029812)
Exon locations 45028787-45029812
Number of introns and link to fasta file 0
intron lengths 0
Start 45028787
End 45029812
Gene length 1025
Protein size 341
Complexity index 0.25
Cys number 19
SigP Result CYT
MW 38.946
pI 5.42
TMHMM result ExpAA=0.02 First60=0.00 PredHel=0 Topology=o
Predicted helices 0
Best match to NR protein database inhibitor of apoptosis-1 like protein
E value 4E-074
Match gi|45479593
Score 281
Extent of match 360
Length of best match 401
% identity 40
% Match length 90
First residue of match 41
First residue of sequence 30
Number of segments 1
Species Aedes aegypti
Key words INHIBITOR APOPTOSIS-1 LIKE AEDES AEGYPTI APOPTOSIS 1 APOTOSIS 1-LIKE OCHLEROTATUS TRISERIATUS ALBOPICTUS DIAP1 DROSOPHILA PSEUDOOBSCURA >GI GLOSSINA MORSITANS BOMBYX MORI SIMILAR TO THREAD ISOFORM A APIS MELLIFERA SPODOPTERA EXIGUA ORF17 IAP-3 CYDIA POMONELLA GRANULOVIRUS IAP_GVCP IAP FRUGIPERDA 3 CHORISTONEURA FUMIFERANA MNPV NUCLEOPOLYHEDROVIRUS AMSACTA MOOREI ENTOMOPOXVIRUS TRICHOPLUSIA NI EPIPHYAS POSTVITTANA ANTICARSIA GEMMATALIS APOPTOSIS-3 MAMESTRA CONFIGURATA NPV-A NPV ORGYIA PSEUDOTSUGATA MULTICAPSID IAP3_NPVOP NUCLEAR POLYHEDROSIS VIRUS PRODUCT IAP-1 BUZURA SUPPRESSARIA HYPHANTRIA CUNEA HCIAP-3 HCIAP AGROTIS SEGETUM DEFECTIVE
Best match to SWISSP database Apoptosis 1 inhibitor (Inhibitor of apoptosis 1) (dIAP1) (Protein thread) -
E value 3E-057
Match Q24306|IAP1_DROME
Score 221
Extent of match 403
Length of best match 438
% identity 32
% Match length 92
First residue of match 41
First residue of sequence 27
Number of segments 1
PROSITE motifs ASN_GLYCOSYLATION |CAMP_PHOSPHO_SITE |PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |TYR_PHOSPHO_SITE |MYRISTYL |PRENYLATION |ER_TARGET |MICROBODIES_CTER |ATP_GTP_A |
Non promiscuous prosite motifs ER_TARGET |ATP_GTP_A |
Best match to GO database thread - Drosophila melanogaster - anti-apoptosis - apoptosis - negative regulation of caspase activity - negative regulation of apoptosis - protein monoubiquitination - ubiquitin-protein ligase activity - multicellular organismal development - protein ubiquitination during ubiquitin-dependent protein catabolic process - spermatid nuclear differentiation - border follicle cell migration (sensu Insecta) - germ cell migration - antennal morphogenesis - sensory organ development
E value E-5
Function descriptors ubiquitin-protein ligase activity||acid-amino acid ligase activity||ligase activity\, forming carbon-nitrogen bonds||ligase activity||catalytic activity
Function parent catalytic activity
Function second parent ligase activity
GO # GO:0004842
E value of functional GO 2e-22
Component descriptors nucleus||intracellular membrane-bound organelle||intracellular organelle||prospore||immature spore
Component parent immature spore
Component second parent prospore
GO # GO:0005634
E value of component GO 2e-22
Process descriptors anti-apoptosis||negative regulation of apoptosis||negative regulation of programmed cell death||negative regulation of cellular physiological process||negative regulation of physiological process||negative regulation of biological process||regulation of biological process
Process parent catalytic activity
Process second parent ligase activity
GO # GO:0006916
E value of process GO 2e-22
Best match to KOG database Apoptosis inhibitor IAP1 and related BIR domain proteins
E value 7E-022
General class Cell cycle control, cell division, chromosome partitioning, General function prediction only
Best match to PFAM database BIR
E value 1E-019
Best match to SMART database BIR
E value 4E-021
Best match to AEGY-PEP database inhibitor of apoptosis
E value 1e-75
Match AAEL009074-RA
Score 279
Extent of match 360
Length of best match 401
% identity 40
% Match length 90
First residue of match 41
First residue of sequence 30
Number of segments 1
Best match to DMPROT database th-PC
E value 4E-058
Match th-PC
Score 221
Extent of match 403
Length of best match 438
% identity 32
% Match length 92
First residue of match 41
First residue of sequence 27
Number of segments 1
Best match to CELEG database bir-2 Inhibitor of Apoptosis domain. status:Confirmed TR:Q18727
E value 7E-007
Match C50B8.2
Score 51.2
Extent of match 216
Length of best match 308
% identity 25
% Match length 70
First residue of match 21
First residue of sequence 48
Number of segments 2
Best match to ARAB database zinc finger (C3HC4-type RING finger) family prote
E value 6E-008
Match AT1G54150.1
Score 55.1
Extent of match 64
Length of best match 383
% identity 39
% Match length 17
First residue of match 320
First residue of sequence 283
Number of segments 1
Best match to YEAST database SW:PEXA_YEAST Q05568 saccharomyces cerevisiae (baker's yeast). peroxisome
E value 0.092
Match NR_SC:SW-PEXA_YEAST
Score 33.1
Extent of match 95
Length of best match 337
% identity 29
% Match length 28
First residue of match 232
First residue of sequence 259
Number of segments 1
Best match to clusterized An. gambiae ESTs from different libraries all-ests-contig_6783
E value 1e-121
Score 431
Extent of match 267
Length of best match 1190
% identity 79
% Match length 22
First residue of match 396
First residue of sequence 1
Number of segments 1
Orientation of output FOR
Number of sequences on assembled contig 7
ESTs coming from from all-instars library 1
Blood-abdomen library 0
Sugar-abd library 0
Infected blood-abd library 0
Big blood fed library 2
Big non blood fed library 4
Head library 0
Immune cells 0
normalized-fatbody 0
Female salivary glands (Ribeiro and Pasteur) 0
Male salivary glands 0
Best match to Affymetrix chip Ag.2L.1016.0_CDS_at
E value 0
Extent of match 299
% identity 99
Clustered at 35%-Sim- on 60% of length - - Cluster# 0
# seqs 0
Clustered at 45%-Sim- on 60% of length - - Cluster# 0
# seqs 0
Clustered at 55%-Sim- on 60% of length - - Cluster# 0
# seqs 0
Clustered at 65%-Sim- on 60% of length - - Cluster# 0
# seqs 0
Clustered at 75%-Sim- on 6% of length - - Cluster# 0
# seqs 0
Clustered at 85%-Sim- on 60% of length - - Cluster# 0
# seqs 0
Clustered at 95%-Sim- on 60% of length - - Cluster# 6308
# seqs 1



User Contributed Notes
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Ag.2L.1016.0_UTR_at


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