| Probeset ID
| Ag.2L.1022.0_CDS_a_at
| Current gene ID
| AGAP007514
| Affymetrix transcript data
| ENSANGT00000009418 /FEA=ENS /TIER=CDS /ANNOT=ENSANGT00000009418 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1022 /SEG=chr2L:-46544331,46549826
| | |
| STAGE
| SIGNAL MEAN
| STD DEV
| L
| 277
| 29.28
| M
| 327.6
| 64.34
| NBF
| 269.6
| 84.97
| BF3h
| 287.83
| 29.25
| BF24h
| 403.1
| 39.13
| BF48h
| 394.57
| 46.54
| BF72h
| 401.93
| 26.05
| BF96h
| 341.97
| 51.91
| BF15d
| 237.2
| 30.68
| | | | | | | | | | |
|
| TISSUE
| SIGNAL MEAN
| STD DEV
| Fat bodies
| 438.4
| 77.34
| Midgut
| 389.2
| 10.97
| Ovaries
| 595.37
| 113.79
| | | |
|
| 
|
AFFYMETRIX ANNOTATION
| Probeset ID
| Ag.2L.1022.0_CDS_a_at
| Annotation Date
| 3/8/2007
| Target Description
| ens:ENSANGT00000009418 /FEA=ENS /TIER=CDS /ANNOT=ens:ENSANGT00000009418 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1022 /SEG=chr2L:-46544331,46549826
| Genome Version
| February 2003 (IAGP v.MOZ2)
| Alignments
| chr2L:46544331-46549826 (-) // 100.0 //
| Ensembl
| ENSANGG00000016545
| Annotation Description
| This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
| Annotation Transcript Cluster
| XM_308362(11)
| Transcript Assignments
| ENSANGT00000019032 // cdna:novel chromosome:AgamP3:2L:47111485:47125291:-1 gene:ENSANGG00000016545 // ensembl_transcript // 11 // --- /// XM_308362 // Anopheles gambiae str. PEST ENSANGP00000019032 (ENSANGG00000016545), partial mRNA. // refseq // 11 // --
| Annotation Notes
| ENSANGESTT00000001866 // ensembl_est // 4 // Cross Hyb Matching Probes /// SNAP_ANOPHELES00000021109 // ensembl_prediction // 7 // Cross Hyb Matching Probes /// SNAP_ANOPHELES00000021117 // ensembl_prediction // 4 // Cross Hyb Matching Probes /// BX034099
| | | | | | | | | | |
ANOXCEL ANNOTATION
| Seq name
| AGAP007514-PA
| First residue
| M
| Description
| pep:novel chromosome:AgamP3:2L:47113511:47115461:-1 gene:AGAP007514 transcript:AGAP007514-RA
| CDS name and link to nucleotide data
| AGAP007514-RA
| Description
| cdna:novel chromosome:AgamP3:2L:47113511:47115461:-1 gene:AGAP007514
| Stop?
| *
| Best match to AG-CDS
| AGAP007514-RA
| E value
| 0
| Score
| 1119
| Extent of match
| 525
| Length of best match
| 1819
| % identity
| 100
| % Match length
| 29
| First residue of match - UTR overhang
| 242
| First residue of sequence
| 1
| Link to whole gene + 2000nt 5' + 200nt 3'
| AGAP007514-PA
| Link to 5' 2,000 nt
| AGAP007514-PA
| Link to 3' 200 nt
| AGAP007514-PA
| Gene name and view at Ensembl
| AGAP007514
| Protein view at Ensembl
| AGAP007514-PA
| Chromosome
| 2L
| For or Rev
| R
| Location
| join(complement(47115101..47115220),complement(47114128..47115032),complement(47113511..47114063))
| Exon locations
| 47115101-47115220 47114128-47115032 47113511-47114063
| Number of introns and link to fasta file
| 2
| intron lengths
| 69 65
| Start
| 47113511
| End
| 47115220
| Gene length
| 1709
| Protein size
| 525
| Complexity index
| 0.37
| Increased AA (fold over average usage)
| C(3.1)
| Cys number
| 32
| SigP Result
| CYT
| MW
| 61.841
| pI
| 8.1
| TMHMM result
| ExpAA=0.00 First60=0.00 PredHel=0 Topology=o
| Predicted helices
| 0
| Best match to NR protein database
| hypothetical protein AaeL_AAEL000439
| E value
| 3E-092
| Match
| gi|108884274
| Score
| 342
| Extent of match
| 358
| Length of best match
| 711
| % identity
| 45
| % Match length
| 50
| First residue of match
| 5
| First residue of sequence
| 6
| Number of segments
| 2
| Species
| Aedes aegypti
| Key words
| HYPOTHETICAL AAEL_AAEL000439 AEDES AEGYPTI CONSERVED DROSOPHILA MELANOGASTER CG8388-PA >GI PSEUDOOBSCURA UCR-MOTIF DNA BINDING UCR MOTIF GRAUZONE GRAU_DROME TRANSCRIPTION FACTOR
| Best match to SWISSP database
| Transcription factor grauzone - Drosophila melanogaster (Fruit fly)
| E value
| 3E-044
| Match
| Q9U405|GRAU_DROME
| Score
| 179
| Extent of match
| 552
| Length of best match
| 570
| % identity
| 25
| % Match length
| 97
| First residue of match
| 8
| First residue of sequence
| 1
| Number of segments
| 1
| PROSITE motifs
| ASN_GLYCOSYLATION |CAMP_PHOSPHO_SITE |PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |MYRISTYL |AMIDATION |PRENYLATION |MICROBODIES_CTER |ZINC_FINGER_C2H2_1 |
| Non promiscuous prosite motifs
| ZINC_FINGER_C2H2_1 |
| Best match to GO database
| grauzone - Drosophila melanogaster - cellularization - pole cell formation - specific RNA polymerase II transcription factor activity - nucleus - female meiosis - homologous chromosome segregation - regulation of transcription from RNA polymerase II promoter - egg activation
| E value
| E-4
| Function descriptors
| specific RNA polymerase II transcription factor activity||RNA polymerase II transcription factor activity||transcription regulator activity
| Function parent
| transcription regulator activity
| Function second parent
| RNA polymerase II transcription factor activity
| GO #
| GO:0003704
| E value of functional GO
| 7e-45
| Component descriptors
| nucleus||intracellular membrane-bound organelle||intracellular organelle||prospore||immature spore
| Component parent
| immature spore
| Component second parent
| prospore
| GO #
| GO:0005634
| E value of component GO
| 7e-45
| Process descriptors
| cellularization||cellular physiological process
| Process parent
| transcription regulator activity
| Process second parent
| RNA polymerase II transcription factor activity
| GO #
| GO:0007349
| E value of process GO
| 7e-45
| Best match to KOG database
| Zn finger proteins
| E value
| 8E-011
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