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Probeset ID Ag.2L.1022.2_a_at
Current gene ID AGAP007518
Affymetrix transcript data BX053974.1 /FEA=mRNA /TIER=mRNA /DEF=Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC31DG08 of strain 6-9 of Anopheles gambiae (African malaria mosquito). /EVID_CNT=2 /EVID_TYPE=mRNA /GENE_CLUSTER=AffxAg.1022 /SEG=chr2L:-46556159,46557561


STAGE SIGNAL MEAN STD DEV
L 326.03 43.38
M 312.23 43.46
NBF 282.23 47.46
BF3h 298.63 45.15
BF24h 341.13 60.04
BF48h 478.27 84.13
BF72h 376.1 48.29
BF96h 276.67 9.26
BF15d 283.07 54.98
TISSUE SIGNAL MEAN STD DEV
Fat bodies 200.77 13.36
Midgut 296.3 26.25
Ovaries 331.93 88.11


ENSEMBL ANNOTATION
VECTORBASE ANNOTATION
USER-CONTRIBUTED NOTES (0)

AFFYMETRIX ANNOTATION
Probeset ID Ag.2L.1022.2_a_at
Annotation Date 3/8/2007
Target Description gb:BX053974.1 /FEA=mRNA /TIER=mRNA /DEF=Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC31DG08 of strain 6-9 of Anopheles gambiae (African malaria mosquito). /EVID_CNT=
UniGene ID Aga.43335
Genome Version February 2003 (IAGP v.MOZ2)
Alignments chr2L:46556163-46557561 (-) // 99.57 //
Gene Title Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC31DG08 of strain 6-9 of Anopheles gambiae (African malaria mosquito)
Ensembl ENSANGG00000026820
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a UniGene identifier using 1 transcripts. // false // Matching Probes // A
Annotation Transcript Cluster BX053973(11)
Transcript Assignments ENSANGESTT00000001865 // --- // ensembl_est // 11 // --- /// BX053973 // Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC31DG08 of strain 6-9 of Anopheles gambiae (Afric
Annotation Notes XM_308362 // refseq // 3 // Cross Hyb Matching Probes /// BX053974 // gb // 6 // Negative Strand Matching Probes

ANOXCEL ANNOTATION
Seq name AGAP007518-PA
First residue M
Description pep:novel chromosome:AgamP3:2L:47125004:47126800:-1 gene:AGAP007518 transcript:AGAP007518-RA
CDS name and link to nucleotide data AGAP007518-RA
Description cdna:novel chromosome:AgamP3:2L:47125004:47126800:-1 gene:AGAP007518
Stop? *
Best match to AG-CDS AGAP007518-RA
E value 0
Score 830
Extent of match 391
Length of best match 1340
% identity 100
% Match length 29
First residue of match - UTR overhang 63
First residue of sequence 1
Link to whole gene + 2000nt 5' + 200nt 3' AGAP007518-PA
Link to 5' 2,000 nt AGAP007518-PA
Link to 3' 200 nt AGAP007518-PA
Gene name and view at Ensembl AGAP007518
Protein view at Ensembl AGAP007518-PA
Chromosome 2L
For or Rev R
Location join(complement(47125561..47126258),complement(47125004..47125481))
Exon locations 47125561-47126258 47125004-47125481
Number of introns and link to fasta file 1
intron lengths 80
Start 47125004
End 47126258
Gene length 1254
Protein size 391
Complexity index 0.38
Cys number 21
SigP Result CYT
MW 44.071
pI 8.93
TMHMM result ExpAA=0.00 First60=0.00 PredHel=0 Topology=o
Predicted helices 0
Best match to NR protein database hypothetical protein AaeL_AAEL000439
E value 5E-061
Match gi|108884274
Score 238
Extent of match 378
Length of best match 711
% identity 33
% Match length 53
First residue of match 262
First residue of sequence 1
Number of segments 4
Species Aedes aegypti
Key words HYPOTHETICAL AAEL_AAEL000439 AEDES AEGYPTI CONSERVED DANIO RERIO CG4282-PA DROSOPHILA MELANOGASTER >GI PSEUDOOBSCURA SIMILAR TO ZINC FINGER 425 MONODELPHIS DOMESTICA XENOPUS TROPICALIS NOVEL 91 HPF7 HTF10 CANIS FAMILIARIS ISOFORM 6 420
Best match to SWISSP database Zinc finger protein 425 (Fragment) - Macaca fascicularis (Crab eating macaque)
E value 3E-029
Match Q9N003|ZN425_MACFA
Score 129
Extent of match 397
Length of best match 741
% identity 26
% Match length 54
First residue of match 181
First residue of sequence 14
Number of segments 5
PROSITE motifs CAMP_PHOSPHO_SITE |PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |MYRISTYL |AMIDATION |PRENYLATION |MICROBODIES_CTER |ZINC_FINGER_C2H2_1 |
Non promiscuous prosite motifs ZINC_FINGER_C2H2_1 |
Best match to GO database grauzone - Drosophila melanogaster - cellularization - pole cell formation - specific RNA polymerase II transcription factor activity - nucleus - female meiosis - homologous chromosome segregation - regulation of transcription from RNA polymerase II promoter - egg activation
E value E-2
Function descriptors specific RNA polymerase II transcription factor activity||RNA polymerase II transcription factor activity||transcription regulator activity
Function parent transcription regulator activity
Function second parent RNA polymerase II transcription factor activity
GO # GO:0003704
E value of functional GO 1e-28
Component descriptors nucleus||intracellular membrane-bound organelle||intracellular organelle||prospore||immature spore
Component parent immature spore
Component second parent prospore
GO # GO:0005634
E value of component GO 1e-28
Process descriptors cellularization||cellular physiological process
Process parent transcription regulator activity
Process second parent RNA polymerase II transcription factor activity
GO # GO:0007349
E value of process GO 1e-28
Best match to KOG database Homeobox transcription factor SIP1
E value 6E-009
General class Transcription
Best match to PFAM database RAP-1
E value 0.035
Best match to SMART database TFIIE
E value 0.002
Best match to AEGY-PEP database hypothetical protein
E value 3e-63
Match AAEL000439-RA
Score 238
Extent of match 378
Length of best match 711
% identity 33
% Match length 53
First residue of match 262
First residue of sequence 1
Number of segments 4
Best match to DMPROT database CG4282-PA
E value 6E-034
Match CG4282-PA
Score 141
Extent of match 271
Length of best match 652
% identity 31
% Match length 42
First residue of match 330
First residue of sequence 2
Number of segments 3
Best match to CELEG database Partially_confirmed TR:Q9N360 protein_id:AAF60789.1 Length = 662 Score = 94.7
E value 7E-020
Match Y55F3AM.14
Score 94.7
Extent of match 268
Length of best match 662
% identity 26
% Match length 40
First residue of match 6
First residue of sequence 34
Number of segments 3
Best match to ARAB database zinc finger (C2H2 type) protein (WIP
E value 6E-010
Match AT1G51220.1
Score 62
Extent of match 140
Length of best match 337
% identity 32
% Match length 42
First residue of match 178
First residue of sequence 182
Number of segments 3
Best match to YEAST database SW:ZAP1_YEAST P47043 saccharomyces cerevisiae (baker's yeast). zinc-responsive
E value 1E-012
Match NR_SC:SW-ZAP1_YEAST
Score 69.7
Extent of match 167
Length of best match 880
% identity 27
% Match length 19
First residue of match 694
First residue of sequence 121
Number of segments 3
Best match to clusterized An. gambiae ESTs from different libraries all-ests-contig_10044
E value 4e-90
Score 327
Extent of match 353
Length of best match 1151
% identity 45
% Match length 31
First residue of match 186
First residue of sequence 1
Number of segments 2
Orientation of output REV
Number of sequences on assembled contig 4
ESTs coming from from all-instars library 0
Blood-abdomen library 0
Sugar-abd library 0
Infected blood-abd library 0
Big blood fed library 0
Big non blood fed library 0
Head library 4
Immune cells 0
normalized-fatbody 0
Female salivary glands (Ribeiro and Pasteur) 0
Male salivary glands 0
Best match to Affymetrix chip Ag.2L.1022.2_a_at
E value 1E-155
Extent of match 260
% identity 98
Clustered at 35%-Sim- on 60% of length - - Cluster# 0
# seqs 140
Clustered at 45%-Sim- on 60% of length - - Cluster# 5338
# seqs 1
Clustered at 55%-Sim- on 60% of length - - Cluster# 5747
# seqs 1
Clustered at 65%-Sim- on 60% of length - - Cluster# 6083
# seqs 1
Clustered at 75%-Sim- on 6% of length - - Cluster# 6254
# seqs 1
Clustered at 85%-Sim- on 60% of length - - Cluster# 6388
# seqs 1
Clustered at 95%-Sim- on 60% of length - - Cluster# 6511
# seqs 1



User Contributed Notes
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Ag.2L.1022.2_a_at


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