| Probeset ID
| Ag.2L.1023.0_CDS_at
| Current gene ID
| AGAP007532
| Affymetrix transcript data
| ENSANGT00000019826 /FEA=ENS /TIER=CDS /ANNOT=ENSANGT00000019826 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1023 /SEG=chr2L:-46676059,46681579
| | |
| STAGE
| SIGNAL MEAN
| STD DEV
| L
| 473.03
| 24.72
| M
| 418.67
| 117.6
| NBF
| 446.23
| 25.05
| BF3h
| 260.47
| 38.15
| BF24h
| 459.23
| 15.66
| BF48h
| 445.33
| 17.28
| BF72h
| 431.5
| 29.78
| BF96h
| 446.67
| 37.91
| BF15d
| 546.7
| 14.48
| | | | | | | | | | |
|
| TISSUE
| SIGNAL MEAN
| STD DEV
| Fat bodies
| 546.13
| 42.64
| Midgut
| 445.53
| 16.54
| Ovaries
| 343.57
| 40.63
| | | |
|
| 
|
AFFYMETRIX ANNOTATION
| Probeset ID
| Ag.2L.1023.0_CDS_at
| Annotation Date
| 3/8/2007
| Target Description
| ens:ENSANGT00000019826 /FEA=ENS /TIER=CDS /ANNOT=ens:ENSANGT00000019826 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1023 /SEG=chr2L:-46676059,46681579
| Genome Version
| February 2003 (IAGP v.MOZ2)
| Alignments
| chr2L:46676059-46681579 (-) // 100.0 //
| Ensembl
| ENSANGG00000017337
| InterPro
| IPR006077 // Vinculin/alpha-catenin // 3.8E-90
| Annotation Description
| This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
| Annotation Transcript Cluster
| XM_308347(11)
| Transcript Assignments
| ENSANGESTT00000001854 // --- // ensembl_est // 11 // --- /// SNAP_ANOPHELES00000021188 // cdna:SNAP chromosome:AgamP3:2L:47245818:47250818:-1 // ensembl_prediction // 11 // --- /// ENSANGT00000019826 // cdna:novel chromosome:AgamP3:2L:47245307:47250818:-1
| | | | | | | | | | |
ANOXCEL ANNOTATION
| Seq name
| AGAP007532-PA
| First residue
| M
| Description
| pep:novel chromosome:AgamP3:2L:47245307:47250818:-1 gene:AGAP007532 transcript:AGAP007532-RA
| CDS name and link to nucleotide data
| AGAP007532-RA
| Description
| cdna:novel chromosome:AgamP3:2L:47245307:47250818:-1 gene:AGAP007532
| ATG?
| ATG
| Best match to AG-CDS
| AGAP007532-RA
| E value
| 0
| Score
| 1878
| Extent of match
| 965
| Length of best match
| 3409
| % identity
| 100
| % Match length
| 28
| First residue of match - UTR overhang
| 1
| First residue of sequence
| 1
| Link to whole gene + 2000nt 5' + 200nt 3'
| AGAP007532-PA
| Link to 5' 2,000 nt
| AGAP007532-PA
| Link to 3' 200 nt
| AGAP007532-PA
| Gene name and view at Ensembl
| AGAP007532
| Protein view at Ensembl
| AGAP007532-PA
| Chromosome
| 2L
| For or Rev
| R
| Location
| join(complement(47250762..47250818),complement(47246017..47248749),complement(47245818..47245925))
| Exon locations
| 47250762-47250818 47246017-47248749 47245818-47245925
| Number of introns and link to fasta file
| 2
| intron lengths
| 2013 92
| Start
| 47245818
| End
| 47250818
| Gene length
| 5000
| Protein size
| 965
| Complexity index
| 0.22
| Cys number
| 14
| SigP Result
| CYT
| MW
| 106.848
| pI
| 6.08
| TMHMM result
| ExpAA=0.00 First60=0.00 PredHel=0 Topology=o
| Predicted helices
| 0
| Best match to NR protein database
| vinculin
| E value
| 0.0
| Match
| gi|108878376
| Score
| 1688
| Extent of match
| 968
| Length of best match
| 964
| % identity
| 89
| % Match length
| 100
| First residue of match
| 1
| First residue of sequence
| 1
| Number of segments
| 1
| Species
| Aedes aegypti
| Key words
| VINCULIN AEDES AEGYPTI CG3299-PA DROSOPHILA MELANOGASTER >GI VINC_DROME PSEUDOOBSCURA SIMILAR TO ISOFORM 1 TRIBOLIUM CASTANEUM 2 VINC_BRUMA BRUGIA MALAYI DENSE BODY FAMILY MEMBER DEB-1 CAENORHABDITIS ELEGANS C DEB VINC_CAEEL A GALLUS CHAIN CRYSTAL STRUCTURE CYTOSKELETAL MONODELPHIS DOMESTICA MUS MUSCULUS VINC_MOUSE METAVINCULIN CRA_A VCL HOMO SAPIENS TROGLODYTES CRA_C SYNTHETIC CONSTRUCT META-VCL BOS TAURUS META UNNAMED PRODUCT DANIO RERIO HYPOTHETICAL XENOPUS TROPICALIS UNKNOWN FOR MGC SUS SCROFA PAN
| Best match to SWISSP database
| Vinculin - Drosophila melanogaster (Fruit fly)
| E value
| 0.0
| Match
| O46037|VINC_DROME
| Score
| 1416
| Extent of match
| 973
| Length of best match
| 961
| % identity
| 75
| % Match length
| 101
| First residue of match
| 1
| First residue of sequence
| 1
| Number of segments
| 1
| PROSITE motifs
| ASN_GLYCOSYLATION |PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |MYRISTYL |AMIDATION |PRENYLATION |ER_TARGET |MICROBODIES_CTER |VINCULIN_2 |
| Non promiscuous prosite motifs
| ER_TARGET |VINCULIN_2 |
| Best match to GO database
| catenin (cadherin associated protein), alpha 1 - Mus musculus - actin filament binding - negative regulation of neuroblast proliferation - apical junction assembly - establishment and/or maintenance of cell polarity - negative regulation of apoptosis - positive regulation of smoothened signaling pathway - protein binding - lamellipodium - adherens junction - zonula adherens
| E value
| E-3
| Function descriptors
| actin filament binding||actin binding||cytoskeletal protein binding||protein binding||binding
| Function parent
| binding
| Function second parent
| protein binding
| GO #
| GO:0051015
| E value of functional GO
| 2e-33
| Component descriptors
|
| Component parent
| conoid
| Component second parent
| bud tip
| GO #
| GO:0030027
| E value of component GO
| 2e-33
| Process descriptors
|
| Process parent
| binding
| Process second parent
| protein binding
| GO #
| GO:0007406
| E value of process GO
| 2e-33
| Best match to KOG database
| Alpha-catenin
| E value
| 1E-111
| General class
| Extracellular structures
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