| Probeset ID
| Ag.2L.1024.0_CDS_at
| Current gene ID
| AGAP007568
(AGAP007568 is also associated with: Ag.2L.2793.0_CDS_at)
| Affymetrix transcript data
| ENSANGT00000025986 /FEA=ENS /TIER=CDS /ANNOT=ENSANGT00000025986 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1024 /SEG=chr2L:-47191380,47192378
| | |
| STAGE
| SIGNAL MEAN
| STD DEV
| L
| 109.77
| 83.68
| M
| 49.9
| 39.18
| NBF
| 94.1
| 42.24
| BF3h
| 151.33
| 30.22
| BF24h
| 431.57
| 44.89
| BF48h
| 524.3
| 52.32
| BF72h
| 694.67
| 34.61
| BF96h
| 281.97
| 104.71
| BF15d
| 334.3
| 53.13
| | | | | | | | | | |
|
| TISSUE
| SIGNAL MEAN
| STD DEV
| Fat bodies
| 130.67
| 187.02
| Midgut
| 117.97
| 43.94
| Ovaries
| 445.07
| 68.75
| | | |
|
| 
|
AFFYMETRIX ANNOTATION
| Probeset ID
| Ag.2L.1024.0_CDS_at
| Annotation Date
| 3/8/2007
| Target Description
| ens:ENSANGT00000025986 /FEA=ENS /TIER=CDS /ANNOT=ens:ENSANGT00000025986 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1024 /SEG=chr2L:-47191380,47192378
| Genome Version
| February 2003 (IAGP v.MOZ2)
| Alignments
| chr2L:47191380-47192378 (-) // 100.0 //
| Ensembl
| ENSANGG00000024286
| Annotation Description
| This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
| Annotation Transcript Cluster
| XM_564680(11)
| Transcript Assignments
| ENSANGESTT00000007809 // --- // ensembl_est // 11 // --- /// SNAP_ANOPHELES00000002526 // cdna:SNAP chromosome:AgamP3:2L:47756964:47765112:-1 // ensembl_prediction // 11 // --- /// ENSANGT00000025986 // cdna:novel chromosome:AgamP3:2L:47760620:47761611:-1
| | | | | | | | | |
ANOXCEL ANNOTATION
| Seq name
| AGAP007568-PA
| First residue
| M
| Description
| pep:novel chromosome:AgamP3:2L:47760436:47765112:-1 gene:AGAP007568 transcript:AGAP007568-RA
| CDS name and link to nucleotide data
| AGAP007568-RA
| Description
| cdna:novel chromosome:AgamP3:2L:47760436:47765112:-1 gene:AGAP007568
| ATG?
| ATG
| Stop?
| *
| Best match to AG-CDS
| AGAP007568-RA
| E value
| 0
| Score
| 2924
| Extent of match
| 1508
| Length of best match
| 4527
| % identity
| 100
| % Match length
| 33
| First residue of match - UTR overhang
| 1
| First residue of sequence
| 1
| Link to whole gene + 2000nt 5' + 200nt 3'
| AGAP007568-PA
| Link to 5' 2,000 nt
| AGAP007568-PA
| Link to 3' 200 nt
| AGAP007568-PA
| Gene name and view at Ensembl
| AGAP007568
| Protein view at Ensembl
| AGAP007568-PA
| Chromosome
| 2L
| For or Rev
| R
| Location
| join(complement(47764154..47765112),complement(47761281..47764077),complement(47760436..47761206))
| Exon locations
| 47764154-47765112 47761281-47764077 47760436-47761206
| Number of introns and link to fasta file
| 2
| intron lengths
| 77 75
| Start
| 47760436
| End
| 47765112
| Gene length
| 4676
| Protein size
| 1508
| Complexity index
| 0.18
| Cys number
| 19
| SigP Result
| CYT
| MW
| 167.607
| pI
| 8.36
| TMHMM result
| ExpAA=0.08 First60=0.00 PredHel=0 Topology=o
| Predicted helices
| 0
| Best match to NR protein database
| condens
| E value
| 0.0
| Match
| gi|108872679
| Score
| 1320
| Extent of match
| 1522
| Length of best match
| 1524
| % identity
| 49
| % Match length
| 100
| First residue of match
| 1
| First residue of sequence
| 1
| Number of segments
| 1
| Species
| Aedes aegypti
| Key words
| CONDENSIN XCAP-G'-SUBUNIT AEDES AEGYPTI XCAP G'-SUBUNIT G' SUBUNIT CAP-G ISOFORM B DROSOPHILA MELANOGASTER >GI A D CAP G E SIMILAR TO STRONGYLOCENTROTUS PURPURATUS CHROMOSOME CONDENSATION XENOPUS TROPICALIS LAEVIS XCAP-G Q9YHB5 CND3_XENLA COMPLEX 3 NON-SMC I CHROMOSOME-ASSOCIATED ASSEMBLY ASSOCIATED MONODELPHIS DOMESTICA GALLUS 2 PAN TROGLODYTES HYPOTHETICAL DANIO RERIO HOMO SAPIENS NON SMC BOS TAURUS 1 UNKNOWN FOR MGC Q9BPX3 CND3_HUMAN HCAP-G HOMOLOG ANTIGEN NY-MEL-3 PROTEIN-G HCAP NY MEL-3 MEL
| Best match to SWISSP database
| Condensin complex subunit 3 (Non-SMC condensin I complex subunit G)
| E value
| 2E-070
| Match
| Q9YHB5|CND3_XENLA
| Score
| 268
| Extent of match
| 1078
| Length of best match
| 1034
| % identity
| 24
| % Match length
| 104
| First residue of match
| 17
| First residue of sequence
| 32
| Number of segments
| 1
| PROSITE motifs
| ASN_GLYCOSYLATION |CAMP_PHOSPHO_SITE |PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |TYR_PHOSPHO_SITE |MYRISTYL |PRENYLATION |ER_TARGET |MICROBODIES_CTER |LEUCINE_ZIPPER |
| Non promiscuous prosite motifs
| ER_TARGET |LEUCINE_ZIPPER |
| Best match to GO database
| NCAPG, CAPG, NYMEL3: Condensin complex subunit 3 - Homo sapiens - molecular_function - protein binding - mitotic chromosome condensation - nucleus
| E value
| E-6
| Function descriptors
| molecular_function
| Function parent
| molecular_function
| GO #
| GO:0003674
| E value of functional GO
| 3e-69
| Component descriptors
| nucleus||intracellular membrane-bound organelle||intracellular organelle||prospore||immature spore
| Component parent
| immature spore
| Component second parent
| prospore
| GO #
| GO:0005634
| E value of component GO
| 3e-69
| Process descriptors
|
| Process parent
| molecular_function
| GO #
| GO:0007076
| E value of process GO
| 3e-69
| Best match to KOG database
| Chromosome condensation complex Condens
| E value
| 5E-041
| General class
| Chromatin structure and dynamics, Cell cycle control, cell division, chromosome partitioning
| Best match to PFAM database
| AF-4
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