| Probeset ID
| Ag.2L.1027.0_CDS_at
| Current gene ID
| AGAP007607
| Affymetrix transcript data
| ENSANGT00000009345 /FEA=ENS /TIER=CDS /ANNOT=ENSANGT00000009345 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1027 /SEG=chr2L:-47606849,47608316
| | |
| STAGE
| SIGNAL MEAN
| STD DEV
| L
| 210
| 27.54
| M
| 178.03
| 63.98
| NBF
| 139
| 18.6
| BF3h
| 184.57
| 20.74
| BF24h
| 464.9
| 117.72
| BF48h
| 287.03
| 30.93
| BF72h
| 287.93
| 33.91
| BF96h
| 240.47
| 59.46
| BF15d
| 210.03
| 63.87
| | | | | | | | | | |
|
| TISSUE
| SIGNAL MEAN
| STD DEV
| Fat bodies
| 924.83
| 299.75
| Midgut
| 352.93
| 20.5
| Ovaries
| 570.8
| 24.45
| | | |
|
| 
|
AFFYMETRIX ANNOTATION
| Probeset ID
| Ag.2L.1027.0_CDS_at
| Annotation Date
| 3/8/2007
| Target Description
| ens:ENSANGT00000009345 /FEA=ENS /TIER=CDS /ANNOT=ens:ENSANGT00000009345 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1027 /SEG=chr2L:-47606849,47608316
| Genome Version
| February 2003 (IAGP v.MOZ2)
| Alignments
| chr2L:47606849-47608316 (-) // 99.93 //
| Ensembl
| ENSANGG00000006994
| Annotation Description
| This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
| Annotation Transcript Cluster
| XM_308265(11)
| Transcript Assignments
| ENSANGESTT00000007786 // --- // ensembl_est // 11 // --- /// ENSANGT00000009345 // cdna:novel chromosome:AgamP3:2L:48176089:48177551:-1 gene:ENSANGG00000006994 // ensembl_transcript // 11 // --- /// XM_308265 // Anopheles gambiae str. PEST ENSANGP00000009
| | | | | | | | | |
ANOXCEL ANNOTATION
| Seq name
| AGAP007607-PA
| First residue
| M
| Description
| pep:novel chromosome:AgamP3:2L:48175958:48177554:-1 gene:AGAP007607 transcript:AGAP007607-RA
| CDS name and link to nucleotide data
| AGAP007607-RA
| Description
| cdna:novel chromosome:AgamP3:2L:48175958:48177554:-1 gene:AGAP007607
| ATG?
| ATG
| Best match to AG-CDS
| AGAP007607-RA
| E value
| 0
| Score
| 956
| Extent of match
| 467
| Length of best match
| 1407
| % identity
| 100
| % Match length
| 33
| First residue of match - UTR overhang
| 1
| First residue of sequence
| 1
| Link to whole gene + 2000nt 5' + 200nt 3'
| AGAP007607-PA
| Link to 5' 2,000 nt
| AGAP007607-PA
| Link to 3' 200 nt
| AGAP007607-PA
| Gene name and view at Ensembl
| AGAP007607
| Protein view at Ensembl
| AGAP007607-PA
| Chromosome
| 2L
| For or Rev
| R
| Location
| join(complement(48177450..48177554),complement(48176944..48177389),complement(48176103..48176878),complement(48175961..48176037))
| Exon locations
| 48177450-48177554 48176944-48177389 48176103-48176878 48175961-48176037
| Number of introns and link to fasta file
| 3
| intron lengths
| 61 66 66
| Start
| 48175961
| End
| 48177554
| Gene length
| 1593
| Protein size
| 467
| Complexity index
| 0.23
| Cys number
| 16
| SigP Result
| CYT
| MW
| 53.883
| pI
| 8.68
| TMHMM result
| ExpAA=0.71 First60=0.00 PredHel=0 Topology=o
| Predicted helices
| 0
| Best match to NR protein database
| CG2906-
| E value
| 5E-074
| Match
| gi|45550381
| Score
| 281
| Extent of match
| 440
| Length of best match
| 447
| % identity
| 38
| % Match length
| 98
| First residue of match
| 8
| First residue of sequence
| 34
| Number of segments
| 1
| Species
| Drosophila melanogaster
| Key words
| CG2906-PB ISOFORM B DROSOPHILA MELANOGASTER >GI SIMILAR TO APIS MELLIFERA PSEUDOOBSCURA CHROMOSOME 1 OPEN READING FRAME 66 CRA_B HOMO SAPIENS MACACA MULATTA CG2906-PA A HYPOTHETICAL TAURUS CGI-41 CRA_A CGI 41 RATTUS NORVEGICUS 2 MUSCULUS UNNAMED PRODUCT TRIBOLIUM CASTANEUM SEQUENCE MUS MONODELPHIS DOMESTICA CANIS FAMILIARIS TETRAODON NIGROVIRIDIS CRA_C XENOPUS LAEVIS TROPICALIS NOVEL ZGC DANIO RERIO
| Best match to SWISSP database
| UPF0431 protein C1orf66 - Homo sapiens (Human)
| E value
| 5E-065
| Match
| Q96FB5|CA066_HUMAN
| Score
| 248
| Extent of match
| 456
| Length of best match
| 475
| % identity
| 36
| % Match length
| 96
| First residue of match
| 23
| First residue of sequence
| 21
| Number of segments
| 1
| PROSITE motifs
| ASN_GLYCOSYLATION |PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |MYRISTYL |PRENYLATION |MICROBODIES_CTER |
| Best match to GO database
| Arabidopsis thaliana - cellular_component - biological_process
| E value
| E-3
| Function descriptors
|
| Component descriptors
| cellular_component
| Component parent
| cellular_component
| GO #
| GO:0005575
| E value of component GO
| 2e-31
| Process descriptors
| biological_process
| Process parent
| catalytic activity
| Process second parent
| oxidoreductase activity
| GO #
| GO:0008150
| E value of process GO
| 2e-31
| Best match to KOG database
| rRNA adenine N-6-methyltransferase
| E value
| 5E-068
| General class
| RNA processing and modification
| Best match to PFAM database
| Methyltransf_11
| E value
| 0.046
| Best match to SMART database
| rADc
| E value
| 0.40
| Best match to AEGY-PEP database
| glutamate-cysteine liga
| E value
| 0.53
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
