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Probeset ID Ag.2L.1029.0_CDS_at
Current gene ID AGAP007725
Affymetrix transcript data ENSANGT00000009252 /FEA=ENS /TIER=CDS /ANNOT=ENSANGT00000009252 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1029 /SEG=chr2L:-48752801,48756622


STAGE SIGNAL MEAN STD DEV
L 1444.97 121.31
M 852 65.82
NBF 981.37 61.54
BF3h 674.87 73.69
BF24h 1734.4 55.3
BF48h 1604.6 123.45
BF72h 1626.07 50.87
BF96h 1396.7 171.77
BF15d 1457.3 40.27
TISSUE SIGNAL MEAN STD DEV
Fat bodies 886.8 404.83
Midgut 764.17 33.32
Ovaries 3443.3 323.36


ENSEMBL ANNOTATION
VECTORBASE ANNOTATION
USER-CONTRIBUTED NOTES (0)

AFFYMETRIX ANNOTATION
Probeset ID Ag.2L.1029.0_CDS_at
Annotation Date 3/8/2007
Target Description ens:ENSANGT00000009252 /FEA=ENS /TIER=CDS /ANNOT=ens:ENSANGT00000009252 /EVID_CNT=4 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1029 /SEG=chr2L:-48752801,48756622
Genome Version February 2003 (IAGP v.MOZ2)
Alignments chr2L:48752801-48756622 (-) // 99.77 //
Ensembl ENSANGG00000006928
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
Annotation Transcript Cluster XM_308151(11)
Transcript Assignments ENSANGESTT00000010442 // --- // ensembl_est // 9 // --- /// ENSANGT00000009252 // cdna:novel chromosome:AgamP3:2L:49322516:49325861:-1 gene:ENSANGG00000006928 // ensembl_transcript // 11 // --- /// XM_308151 // Anopheles gambiae str. PEST ENSANGP000000092

ANOXCEL ANNOTATION
Seq name AGAP007725-PA
First residue M
Description pep:novel chromosome:AgamP3:2L:49322041:49325933:-1 gene:AGAP007725 transcript:AGAP007725-RA
CDS name and link to nucleotide data AGAP007725-RA
Description cdna:novel chromosome:AgamP3:2L:49322041:49325933:-1 gene:AGAP007725
ATG? ATG
Stop? *
Best match to AG-CDS AGAP007725-RA
E value 0
Score 1816
Extent of match 892
Length of best match 3234
% identity 100
% Match length 28
First residue of match - UTR overhang 1
First residue of sequence 1
Link to whole gene + 2000nt 5' + 200nt 3' AGAP007725-PA
Link to 5' 2,000 nt AGAP007725-PA
Link to 3' 200 nt AGAP007725-PA
Gene name and view at Ensembl AGAP007725
Protein view at Ensembl AGAP007725-PA
Chromosome 2L
For or Rev R
Location join(complement(49325724..49325933),complement(49325494..49325639),complement(49324946..49325257),complement(49324670..49324872),complement(49323186..49324570),complement(49322909..49323106),complement(49322596..49322820))
Exon locations 49325724-49325933 49325494-49325639 49324946-49325257 49324670-49324872 49323186-49324570 49322909-49323106 49322596-49322820
Number of introns and link to fasta file 6
intron lengths 85 237 74 100 80 89
Start 49322596
End 49325933
Gene length 3337
Protein size 892
Complexity index 0.21
Cys number 25
SigP Result CYT
MW 98.476
pI 9.06
TMHMM result ExpAA=0.05 First60=0.05 PredHel=0 Topology=o
Predicted helices 0
Best match to NR protein database conserved hypothetical protein
E value 0.0
Match gi|108881034
Score 959
Extent of match 829
Length of best match 781
% identity 61
% Match length 106
First residue of match 1
First residue of sequence 119
Number of segments 1
Species Aedes aegypti
Key words CONSERVED HYPOTHETICAL AEDES AEGYPTI DROSOPHILA MELANOGASTER >GI PSEUDOOBSCURA SIMILAR TO MELLIFERA TRIBOLIUM CASTANEUM Q6PFK1 ZN598_BRARE FINGER 598 ISOFORM-1-LIKE DANIO RERIO ISOFORM 1-LIKE LIKE ZINC 3 GALLUS 1 2 MUS MUSCULUS ZN598_MOUSE RATTUS NORVEGICUS CRA_E HOMO SAPIENS CRA_C CRA_D CRA_G ZN598_HUMAN CRA_A CANIS FAMILIARIS XENOPUS LAEVIS UNKNOWN FOR IMAGE TROPICALIS UNNAMED PRODUCT TETRAODON NIGROVIRIDIS
Best match to SWISSP database Zinc finger protein 598 - Danio rerio (Zebrafish) (Brachydanio rerio)
E value 1E-108
Match Q6PFK1|ZN598_DANRE
Score 392
Extent of match 950
Length of best match 953
% identity 30
% Match length 100
First residue of match 35
First residue of sequence 3
Number of segments 1
PROSITE motifs ASN_GLYCOSYLATION |CAMP_PHOSPHO_SITE |PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |TYR_PHOSPHO_SITE |MYRISTYL |AMIDATION |PRENYLATION |ER_TARGET |MICROBODIES_CTER |ZINC_FINGER_C2H2_1 |
Non promiscuous prosite motifs ER_TARGET |ZINC_FINGER_C2H2_1 |
Best match to GO database Protein of unknown function that may interact with ribosomes, based on co-purification experiments - Saccharomyces cerevisiae - molecular_function - cytoplasm - ribosome - biological_process
E value E-3
Function descriptors molecular_function
Function parent molecular_function
GO # GO:0003674
E value of functional GO 2e-38
Component descriptors cytoplasm||prospore||immature spore
Component parent immature spore
Component second parent prospore
GO # GO:0005737
E value of component GO 2e-38
Process descriptors biological_process
Process parent molecular_function
GO # GO:0008150
E value of process GO 2e-38
Best match to KOG database Predicted E3 ubiquitin ligase
E value 1E-052
General class Posttranslational modification, protein turnover, chaperones
Best match to PFAM database HPC2
E value 0.046
Best match to SMART database RING
E value 5E-005
Best match to AEGY-PEP database conserved hypothetical protein
E value 0
Match AAEL003489-RA
Score 959
Extent of match 829
Length of best match 781
% identity 61
% Match length 106
First residue of match 1
First residue of sequence 119
Number of segments 1
Best match to DMPROT database CG11414-PA
E value 0.0
Match CG11414-PA
Score 664
Extent of match 882
Length of best match 867
% identity 43
% Match length 102
First residue of match 45
First residue of sequence 22
Number of segments 1
Best match to CELEG database zinc-finger containing protein status:Partially_confirmed TR:Q18782
E value 1E-053
Match C52E12.1
Score 207
Extent of match 837
Length of best match 925
% identity 25
% Match length 90
First residue of match 63
First residue of sequence 1
Number of segments 1
Best match to ARAB database similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana]
E value 1E-037
Match AT2G47090.1
Score 155
Extent of match 537
Length of best match 766
% identity 25
% Match length 70
First residue of match 5
First residue of sequence 25
Number of segments 1
Best match to YEAST database SW:Q05580 Q05580 saccharomyces cerevisiae (baker's yeast). chromosome iv cosmid
E value 5E-039
Match NR_SC:SW-Q05580
Score 158
Extent of match 635
Length of best match 639
% identity 24
% Match length 99
First residue of match 53
First residue of sequence 14
Number of segments 1
Best match to clusterized An. gambiae ESTs from different libraries all-ests-contig_9212
E value 1e-164
Score 575
Extent of match 288
Length of best match 1430
% identity 98
% Match length 20
First residue of match 9
First residue of sequence 607
Number of segments 1
Orientation of output FOR
Satisfied 95% id on length 100 Y
Number of sequences on assembled contig 3
ESTs coming from from all-instars library 2
Blood-abdomen library 0
Sugar-abd library 0
Infected blood-abd library 0
Big blood fed library 1
Big non blood fed library 0
Head library 0
Immune cells 0
normalized-fatbody 0
Female salivary glands (Ribeiro and Pasteur) 0
Male salivary glands 0
Best match to Affymetrix chip Ag.2L.1029.0_CDS_at
E value 0
Extent of match 868
% identity 92
Clustered at 35%-Sim- on 60% of length - - Cluster# 4857
# seqs 1
Clustered at 45%-Sim- on 60% of length - - Cluster# 5523
# seqs 1
Clustered at 55%-Sim- on 60% of length - - Cluster# 5952
# seqs 1
Clustered at 65%-Sim- on 60% of length - - Cluster# 6310
# seqs 1
Clustered at 75%-Sim- on 6% of length - - Cluster# 6488
# seqs 1
Clustered at 85%-Sim- on 60% of length - - Cluster# 6634
# seqs 1
Clustered at 95%-Sim- on 60% of length - - Cluster# 6767
# seqs 1



User Contributed Notes
(Disclaimer: The following notes have not been reviewed or verified by this site's authors and thus the validity of their contents are left for the site's users to decide.)

Ag.2L.1029.0_CDS_at


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