| Probeset ID
| Ag.2L.1030.0_CDS_at
| Current gene ID
| AGAP004711
| Affymetrix transcript data
| ENSANGT00000017814 /FEA=ENS /TIER=CDS /ANNOT=ENSANGT00000017814 /EVID_CNT=3 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1030 /SEG=chr2L:+1969680,1971513
| | |
| STAGE
| SIGNAL MEAN
| STD DEV
| L
| 408.1
| 23.1
| M
| 353.17
| 122
| NBF
| 468.7
| 84.09
| BF3h
| 547.87
| 58.01
| BF24h
| 1692.87
| 73.47
| BF48h
| 1930.77
| 87.5
| BF72h
| 1738.1
| 343.65
| BF96h
| 676
| 154.19
| BF15d
| 490.97
| 141.87
| | | | | | | | | | |
|
| TISSUE
| SIGNAL MEAN
| STD DEV
| Fat bodies
| 907.1
| 1017.94
| Midgut
| 747.13
| 78.4
| Ovaries
| 4034.43
| 155.79
| | | |
|
| 
|
AFFYMETRIX ANNOTATION
| Probeset ID
| Ag.2L.1030.0_CDS_at
| Annotation Date
| 3/8/2007
| Target Description
| ens:ENSANGT00000017814 /FEA=ENS /TIER=CDS /ANNOT=ens:ENSANGT00000017814 /EVID_CNT=3 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1030 /SEG=chr2L:+1969680,1971513
| Genome Version
| February 2003 (IAGP v.MOZ2)
| Alignments
| chr2L:1969680-1971508 (+) // 100.0 //
| Annotation Description
| This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
| Annotation Transcript Cluster
| XM_318117(11)
| Transcript Assignments
| XM_318117 // Anopheles gambiae str. PEST ENSANGP00000017814 (ENSANGG00000015325), partial mRNA. // refseq // 11 // ---
| Annotation Notes
| ENSANGT00000017814 // ensembl_transcript // 7 // Cross Hyb Matching Probes
| | | | | | | | | |
ANOXCEL ANNOTATION
| Seq name
| AGAP004711-PA
| First residue
| M
| Description
| pep:novel chromosome:AgamP3:2L:2487770:2489611:1 gene:AGAP004711 transcript:AGAP004711-RA
| CDS name and link to nucleotide data
| AGAP004711-RA
| Description
| cdna:novel chromosome:AgamP3:2L:2487770:2489611:1 gene:AGAP004711
| ATG?
| ATG
| Stop?
| *
| Best match to AG-CDS
| AGAP004711-RA
| E value
| 0
| Score
| 1209
| Extent of match
| 613
| Length of best match
| 1842
| % identity
| 100
| % Match length
| 33
| First residue of match - UTR overhang
| 1
| First residue of sequence
| 1
| Link to whole gene + 2000nt 5' + 200nt 3'
| AGAP004711-PA
| Link to 5' 2,000 nt
| AGAP004711-PA
| Link to 3' 200 nt
| AGAP004711-PA
| Gene name and view at Ensembl
| AGAP004711
| Protein view at Ensembl
| AGAP004711-PA
| Chromosome
| 2L
| For or Rev
| F
| Location
| 2487770..2489611
| Exon locations
| 2487770-2489611
| Number of introns and link to fasta file
| 0
| intron lengths
| 0
| Start
| 2487770
| End
| 2489611
| Gene length
| 1841
| Protein size
| 613
| Complexity index
| 0.19
| Cys number
| 10
| SigP Result
| CYT
| MW
| 68.924
| pI
| 7.89
| TMHMM result
| ExpAA=8.77 First60=0.00 PredHel=0 Topology=o
| Predicted helices
| 0
| Best match to NR protein database
| DEAD box ATP-dependent RNA helicase
| E value
| 0.0
| Match
| gi|108871945
| Score
| 1109
| Extent of match
| 614
| Length of best match
| 619
| % identity
| 89
| % Match length
| 99
| First residue of match
| 6
| First residue of sequence
| 4
| Number of segments
| 1
| Species
| Aedes aegypti
| Key words
| ATP-DEPENDENT RNA HELICASE AEDES AEGYPTI ATP DEPENDENT SIMILAR TO ABSTRAKT DEAD BOX TRIBOLIUM CASTANEUM ISOFORM 1 APIS MELLIFERA DROSOPHILA MELANOGASTER >GI ABS_DROME PSEUDOOBSCURA DEAD-BOX ASP-GLU-ALA-ASP POLYPEPTIDE 41 GALLUS ASP GLU-ALA-ASP GLU ALA-ASP ALA SAPIENS SYNTHETIC CONSTRUCT PROBABLE DDX41 HOMOLOG CANIS FAMILIARIS HOMO 3 PAN TROGLODYTES Q9UJV9 DDX41_HUMAN CRA_D MUS MUSCULUS UNNAMED PRODUCT RATTUS NORVEGICUS HYPOTHETICAL TAURUS UNKNOWN FOR MGC DDX41_MOUSE MACACA MULATTA VARIANT MONODELPHIS DOMESTICA 2
| Best match to SWISSP database
| ATP-dependent RNA helicase abstrakt (EC 3.6.1.-) (DEAD box protein abstrakt) -
| E value
| 0.0
| Match
| Q9V3C0|ABS_DROME
| Score
| 952
| Extent of match
| 617
| Length of best match
| 619
| % identity
| 78
| % Match length
| 100
| First residue of match
| 4
| First residue of sequence
| 6
| Number of segments
| 1
| PROSITE motifs
| ASN_GLYCOSYLATION |CAMP_PHOSPHO_SITE |PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |TYR_PHOSPHO_SITE |MYRISTYL |AMIDATION |MICROBODIES_CTER |ATP_GTP_A |
| Non promiscuous prosite motifs
| ATP_GTP_A |
| Best match to GO database
| abstrakt - Drosophila melanogaster - ATP-dependent RNA helicase activity - ATP-dependent helicase activity - helicase activity - apoptosis - establishment of cell polarity - anatomical structure morphogenesis - nervous system development - nucleus
| E value
|
| Function descriptors
| ATP-dependent RNA helicase activity||ATP-dependent helicase activity||ATPase activity\, coupled||ATPase activity||nucleoside-triphosphatase activity||pyrophosphatase activity||hydrolase activity\, acting on acid anhydrides\, in phosphorus-containing anhydrides||hydrolase activity\, acting on acid anhydrides||hydrolase activity||catalytic activity
| Function parent
| catalytic activity
| Function second parent
| hydrolase activity
| GO #
| GO:0004004
| E value of functional GO
| 0
| Component descriptors
| nucleus||intracellular membrane-bound organelle||intracellular organelle||prospore||immature spore
| Component parent
| immature spore
| Component second parent
| prospore
| GO #
| GO:0005634
| E value of component GO
| 0
| Process descriptors
| apoptosis||programmed cell death||cell death||cellular physiological process
| Process parent
| catalytic activity
| Process second parent
| hydrolase activity
| GO #
| GO:0006915
| E value of process GO
| 0
| Best match to KOG database
| DEAD-box protein abstrakt
| E value
| 0.0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
