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Probeset ID Ag.2L.1033.0_CDS_at
Current gene ID AGAP004784
Affymetrix transcript data ENSANGT00000010681 /FEA=ENS /TIER=CDS /ANNOT=ENSANGT00000010681 /EVID_CNT=3 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1033 /SEG=chr2L:+3001739,3003661


STAGE SIGNAL MEAN STD DEV
L 493.17 17.31
M 695.4 42.96
NBF 583.6 35.68
BF3h 339.5 70.08
BF24h 300 48.39
BF48h 206.37 38.17
BF72h 182.37 46.63
BF96h 434.47 96.12
BF15d 430.53 23.99
TISSUE SIGNAL MEAN STD DEV
Fat bodies 927.47 188.88
Midgut 65.23 49.65
Ovaries 136.77 16.61


ENSEMBL ANNOTATION
VECTORBASE ANNOTATION
USER-CONTRIBUTED NOTES (0)

AFFYMETRIX ANNOTATION
Probeset ID Ag.2L.1033.0_CDS_at
Annotation Date 3/8/2007
Target Description ens:ENSANGT00000010681 /FEA=ENS /TIER=CDS /ANNOT=ens:ENSANGT00000010681 /EVID_CNT=3 /EVID_TYPE=ENS EST /GENE_CLUSTER=AffxAg.1033 /SEG=chr2L:+3001739,3003661
Genome Version February 2003 (IAGP v.MOZ2)
Alignments chr2L:3001739-3003661 (+) // 100.0 //
Ensembl ENSANGG00000008192
Trans Membrane ENSANGP00000010681 // span:357-379,472-490 // numtm:2
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
Annotation Transcript Cluster XM_318028(11)
Transcript Assignments ENSANGT00000010681 // cdna:novel chromosome:AgamP3:2L:3519838:3521873:1 gene:ENSANGG00000008192 // ensembl_transcript // 11 // --- /// XM_318028 // Anopheles gambiae str. PEST ENSANGP00000010681 (ENSANGG00000008192), partial mRNA. // refseq // 11 // ---
Annotation Notes ENSANGESTT00000004086 // ensembl_est // 3 // Cross Hyb Matching Probes

ANOXCEL ANNOTATION
Seq name AGAP004784-PA
First residue M
Description pep:novel chromosome:AgamP3:2L:3519838:3522515:1 gene:AGAP004784 transcript:AGAP004784-RA
CDS name and link to nucleotide data AGAP004784-RA
Description cdna:novel chromosome:AgamP3:2L:3519838:3522515:1 gene:AGAP004784
Best match to AG-CDS AGAP004784-RA
E value 0
Score 994
Extent of match 493
Length of best match 2290
% identity 100
% Match length 22
First residue of match - UTR overhang 173
First residue of sequence 1
Link to whole gene + 2000nt 5' + 200nt 3' AGAP004784-PA
Link to 5' 2,000 nt AGAP004784-PA
Link to 3' 200 nt AGAP004784-PA
Gene name and view at Ensembl AGAP004784
Protein view at Ensembl AGAP004784-PA
Chromosome 2L
For or Rev F
Location join(3520010..3520213,3520343..3520734,3520828..3521373,3521462..3521587,3521666..3521879)
Exon locations 3520010-3520213 3520343-3520734 3520828-3521373 3521462-3521587 3521666-3521879
Number of introns and link to fasta file 4
intron lengths 130 94 89 79
Start 3520010
End 3521879
Gene length 1869
Protein size 493
Complexity index 0.25
Cys number 10
SigP Result CYT
MW 56.816
pI 8.91
TMHMM result ExpAA=40.59 First60=1.54 PredHel=2 Topology=o355-377i470-488o
Predicted helices 2
% membrane 8.1
% outside 73
% inside 18.9
Best match to NR protein database conserved hypothetical protein
E value 1E-164
Match gi|108879021
Score 581
Extent of match 491
Length of best match 502
% identity 56
% Match length 98
First residue of match 7
First residue of sequence 1
Number of segments 1
Species Aedes aegypti
Key words CONSERVED HYPOTHETICAL AEDES AEGYPTI SIMILAR TO CG4020-PA TRIBOLIUM CASTANEUM DROSOPHILA PSEUDOOBSCURA >GI MELANOGASTER CG5065-PA MELLIFERA ISOFORM A CG1441-PB B C APIS CG1443-PA
Best match to SWISSP database Fatty acyl-CoA reductase 1 (EC 1.2.1.-) (Male sterility domain-containing
E value 1E-081
Match Q8WVX9|FACR1_HUMAN
Score 303
Extent of match 477
Length of best match 515
% identity 34
% Match length 93
First residue of match 3
First residue of sequence 8
Number of segments 1
PROSITE motifs ASN_GLYCOSYLATION |CAMP_PHOSPHO_SITE |PKC_PHOSPHO_SITE |CK2_PHOSPHO_SITE |TYR_PHOSPHO_SITE |MYRISTYL |AMIDATION |PRENYLATION |MICROBODIES_CTER |
Best match to GO database MLSTD2, FAR1, UNQ2423/PRO4981: Fatty acyl-CoA reductase 1 - Homo sapiens - protein binding
E value E-8
Function descriptors long-chain-fatty-acyl-CoA reductase activity||oxidoreductase activity\, acting on the aldehyde or oxo group of donors\, NAD or NADP as acceptor||oxidoreductase activity\, acting on the aldehyde or oxo group of donors||oxidoreductase activity||catalytic activity
Function parent catalytic activity
Function second parent oxidoreductase activity
GO # GO:0050062
E value of functional GO 2e-81
Component descriptors peroxisome||microbody||nuclear cyclin-dependent protein kinase holoenzyme complex||cyclin-dependent protein kinase holoenzyme complex||prospore||immature spore
Component parent immature spore
Component second parent prospore
GO # GO:0005777
E value of component GO 2e-81
Process descriptors wax biosynthesis||fatty acid biosynthesis||carboxylic acid biosynthesis||carboxylic acid metabolism||organic acid metabolism||cellular metabolism||cellular physiological process
Process parent catalytic activity
Process second parent oxidoreductase activity
GO # GO:0010025
E value of process GO 2e-81
Best match to KOG database Acyl-CoA reductase
E value 1E-116
General class Lipid transport and metabolism
Best match to PFAM database NAD_binding_4
E value 8E-065
Best match to SMART database DNaseIc
E value 0.77
Best match to AEGY-PEP database conserved hypothetical protein
E value 1e-166
Match AAEL005296-RA
Score 581
Extent of match 491
Length of best match 502
% identity 56
% Match length 98
First residue of match 7
First residue of sequence 1
Number of segments 1
Best match to DMPROT database CG4020-PA
E value 1E-104
Match CG4020-PA
Score 376
Extent of match 481
Length of best match 494
% identity 40
% Match length 97
First residue of match 3
First residue of sequence 9
Number of segments 1
Best match to CELEG database Partially_confirmed TR:Q9TZL9 protein_id:AAC67415.1 Length = 536 Score = 243
E value 2E-064
Match Y71H10A.2
Score 243
Extent of match 465
Length of best match 536
% identity 30
% Match length 87
First residue of match 8
First residue of sequence 12
Number of segments 1
Best match to ARAB database acyl CoA reducta
E value 3E-033
Match AT5G22500.1
Score 139
Extent of match 487
Length of best match 491
% identity 25
% Match length 99
First residue of match 14
First residue of sequence 18
Number of segments 1
Best match to YEAST database SW:LYS2_YEAST P07702 saccharomyces cerevisiae (baker's yeast).
E value 5E-004
Match NR_SC:SW-LYS2_YEAST
Score 41.2
Extent of match 135
Length of best match 1392
% identity 28
% Match length 10
First residue of match 962
First residue of sequence 7
Number of segments 1
Best match to clusterized An. gambiae ESTs from different libraries all-ests-contig_31422
E value 1e-124
Score 439
Extent of match 216
Length of best match 661
% identity 100
% Match length 33
First residue of match 13
First residue of sequence 89
Number of segments 1
Orientation of output FOR
Satisfied 95% id on length 100 Y
Number of sequences on assembled contig 1
ESTs coming from from all-instars library 0
Blood-abdomen library 0
Sugar-abd library 0
Infected blood-abd library 0
Big blood fed library 0
Big non blood fed library 1
Head library 0
Immune cells 0
normalized-fatbody 0
Female salivary glands (Ribeiro and Pasteur) 0
Male salivary glands 0
Best match to Affymetrix chip Ag.2L.1033.0_CDS_at
E value 0
Extent of match 454
% identity 99
Clustered at 35%-Sim- on 60% of length - - Cluster# 0
# seqs 0
Clustered at 45%-Sim- on 60% of length - - Cluster# 0
# seqs 0
Clustered at 55%-Sim- on 60% of length - - Cluster# 0
# seqs 0
Clustered at 65%-Sim- on 60% of length - - Cluster# 4028
# seqs 1
Clustered at 75%-Sim- on 6% of length - - Cluster# 4020
# seqs 1
Clustered at 85%-Sim- on 60% of length - - Cluster# 3969
# seqs 1
Clustered at 95%-Sim- on 60% of length - - Cluster# 3898
# seqs 1



User Contributed Notes
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Ag.2L.1033.0_CDS_at


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